RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LINC00474Q9P2X8 69 aa9.19□□□□□ -0.94
CPSF1-206ENST00000531480 CHTF8P0CG12 524 aa9.18□□□□□ -0.94
CPSF1-206ENST00000531480 IFITM1P13164 125 aa9.18□□□□□ -0.94
CPSF1-206ENST00000531480 Q8N1X5 172 aa9.18□□□□□ -0.94
CPSF1-206ENST00000531480 SPANXB1Q9NS25 103 aaPredicted RBP9.18□□□□□ -0.94
CPSF1-206ENST00000531480 FAT1Q14517 4588 aa9.17□□□□□ -0.94
CPSF1-206ENST00000531480 HAMPP81172 84 aa9.17□□□□□ -0.94
CPSF1-206ENST00000531480 PLAC8Q9NZF1 115 aa9.17□□□□□ -0.94
CPSF1-206ENST00000531480 CTAG1AP78358 180 aa9.16□□□□□ -0.94
CPSF1-206ENST00000531480 RPL24P83731 157 aaKnown RBP9.16□□□□□ -0.94
CPSF1-206ENST00000531480 Q6ZRP5 223 aa9.16□□□□□ -0.94
CPSF1-206ENST00000531480 ZNF625Q96I27 306 aaPredicted RBP9.16□□□□□ -0.94
CPSF1-206ENST00000531480 A0A087WYN8 130 aa9.15□□□□□ -0.94
CPSF1-206ENST00000531480 A6NDN8 102 aa9.15□□□□□ -0.94
CPSF1-206ENST00000531480 NDUFC2-KCTD14E9PQ53 114 aa9.15□□□□□ -0.94
CPSF1-206ENST00000531480 TSPEAR-AS2P59090 65 aa9.15□□□□□ -0.94
CPSF1-206ENST00000531480 LBHQ53QV2 105 aaPredicted RBP9.15□□□□□ -0.94
CPSF1-206ENST00000531480 IGKV2-24A0A0C4DH68 120 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 LINC00158P58513 81 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 C9orf116Q5BN46 136 aaPredicted RBP9.14□□□□□ -0.95
CPSF1-206ENST00000531480 SPANXDQ9BXN6 97 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 PPDPFQ9H3Y8 114 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 SPANXCQ9NY87 97 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 TP73-AS1Q9UF72 201 aa9.14□□□□□ -0.95
CPSF1-206ENST00000531480 GAGE2BQ13066 116 aa9.13□□□□□ -0.95
CPSF1-206ENST00000531480 TTTY13Q9BZ97 58 aa9.13□□□□□ -0.95
CPSF1-206ENST00000531480 RPL18AQ02543 176 aaKnown RBP9.12□□□□□ -0.95
CPSF1-206ENST00000531480 C2orf91Q6ZV80 131 aa9.12□□□□□ -0.95
CPSF1-206ENST00000531480 CEND1Q8N111 149 aa9.12□□□□□ -0.95
CPSF1-206ENST00000531480 ERG28Q9UKR5 140 aa9.12□□□□□ -0.95
CPSF1-206ENST00000531480 VPS13BQ7Z7G8 4022 aa9.11□□□□□ -0.95
CPSF1-206ENST00000531480 SMR3BP02814 79 aaPredicted RBP9.11□□□□□ -0.95
CPSF1-206ENST00000531480 SRRM2Q9UQ35 2752 aaKnown RBP9.1□□□□□ -0.95
CPSF1-206ENST00000531480 A0A1W2PNN7 141 aa9.09□□□□□ -0.95
CPSF1-206ENST00000531480 KRTAP10-4P60372 401 aaPredicted RBP9.09□□□□□ -0.95
CPSF1-206ENST00000531480 C9orf129Q5T035 196 aaKnown RBP9.09□□□□□ -0.95
CPSF1-206ENST00000531480 LINC00528Q8N1L1 170 aa9.09□□□□□ -0.95
CPSF1-206ENST00000531480 HINT1P49773 126 aaPredicted RBP9.08□□□□□ -0.96
CPSF1-206ENST00000531480 COL5A1-AS1Q5SY13 56 aa9.08□□□□□ -0.96
CPSF1-206ENST00000531480 Q5VSD8 79 aa9.08□□□□□ -0.96
CPSF1-206ENST00000531480 DPH3Q96FX2 82 aa9.08□□□□□ -0.96
CPSF1-206ENST00000531480 SMIM13P0DJ93 91 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 PFN2P35080 140 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 BATFQ16520 125 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 GAGE2EQ4V326 116 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 BVES-AS1Q5T3Y7 98 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 KRTAP7-1Q8IUC3 87 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 GAGE2DQ9UEU5 116 aa9.07□□□□□ -0.96
CPSF1-206ENST00000531480 FAM229AH3BQW9 127 aa9.06□□□□□ -0.96
CPSF1-206ENST00000531480 MUSTN1Q8IVN3 82 aa9.05□□□□□ -0.96
CPSF1-206ENST00000531480 MIR7-3HGQ8N6C7 128 aa9.05□□□□□ -0.96
CPSF1-206ENST00000531480 CBY1Q9Y3M2 126 aa9.05□□□□□ -0.96
CPSF1-206ENST00000531480 FAM168BA1KXE4 195 aa9.04□□□□□ -0.96
CPSF1-206ENST00000531480 LINC00308Q8TCZ7 52 aa9.04□□□□□ -0.96
CPSF1-206ENST00000531480 RAB37Q96AX2 223 aa9.04□□□□□ -0.96
CPSF1-206ENST00000531480 PLA2G2DQ9UNK4 145 aa9.04□□□□□ -0.96
CPSF1-206ENST00000531480 PLA2G1BP04054 148 aaKnown RBP9.03□□□□□ -0.96
CPSF1-206ENST00000531480 LITAFQ99732 161 aa9.03□□□□□ -0.96
CPSF1-206ENST00000531480 XAGE1AQ9HD64 81 aa9.03□□□□□ -0.96
CPSF1-206ENST00000531480 A0A0U1RRA0 63 aa9.02□□□□□ -0.97
CPSF1-206ENST00000531480 ADAMTSL4-AS1Q5T5F5 129 aa9.02□□□□□ -0.97
CPSF1-206ENST00000531480 TRAV13-2A0A0B4J235 113 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 LOC107984156A0A0G2JMH3 177 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 NDUFC2O95298 119 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 INAFM2P0DMQ5 153 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 ARL17AQ8IVW1 177 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 C7orf33Q8WU49 177 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 SNHG12Q9BXW3 62 aa9.01□□□□□ -0.97
CPSF1-206ENST00000531480 IGLV5-37A0A075B6J1 123 aa9□□□□□ -0.97
CPSF1-206ENST00000531480 A0A0B4J2C4 111 aa9□□□□□ -0.97
CPSF1-206ENST00000531480 SERTAD4-AS1Q5TG53 156 aa9□□□□□ -0.97
CPSF1-206ENST00000531480 SND1-IT1Q9HBX3 110 aa9□□□□□ -0.97
CPSF1-206ENST00000531480 NHP2Q9NX24 153 aaKnown RBP9□□□□□ -0.97
CPSF1-206ENST00000531480 A4D1N5 150 aa8.99□□□□□ -0.97
CPSF1-206ENST00000531480 RPL37AP61513 92 aaKnown RBP8.99□□□□□ -0.97
CPSF1-206ENST00000531480 LYRM7Q5U5X0 104 aa8.99□□□□□ -0.97
CPSF1-206ENST00000531480 FAM19A5Q7Z5A7 132 aaPredicted RBP8.99□□□□□ -0.97
CPSF1-206ENST00000531480 FXYD2P54710 66 aa8.98□□□□□ -0.97
CPSF1-206ENST00000531480 PHF5AQ7RTV0 110 aaKnown RBP8.98□□□□□ -0.97
CPSF1-206ENST00000531480 PRO1854Q9UHT4 67 aa8.98□□□□□ -0.97
CPSF1-206ENST00000531480 A0A1B0GWB2 263 aa8.97□□□□□ -0.97
CPSF1-206ENST00000531480 M0QXV9 152 aa8.97□□□□□ -0.97
CPSF1-206ENST00000531480 PRR3P79522 188 aaKnown RBP8.97□□□□□ -0.97
CPSF1-206ENST00000531480 DAND5Q8N907 189 aa8.97□□□□□ -0.97
CPSF1-206ENST00000531480 C22orf24Q9Y442 160 aa8.97□□□□□ -0.97
CPSF1-206ENST00000531480 HERC1Q15751 4861 aa8.96□□□□□ -0.98
CPSF1-206ENST00000531480 COX6CP09669 75 aa8.96□□□□□ -0.98
CPSF1-206ENST00000531480 TRBV10-2A0A0K0K1G8 114 aa8.95□□□□□ -0.98
CPSF1-206ENST00000531480 VPREB1P12018 145 aa8.95□□□□□ -0.98
CPSF1-206ENST00000531480 NPC2P61916 151 aa8.95□□□□□ -0.98
CPSF1-206ENST00000531480 KRTAP11-1Q8IUC1 163 aa8.95□□□□□ -0.98
CPSF1-206ENST00000531480 MYCBP2O75592 4640 aa8.95□□□□□ -0.98
CPSF1-206ENST00000531480 FLG2Q5D862 2391 aaPredicted RBP8.94□□□□□ -0.98
CPSF1-206ENST00000531480 CFC1BP0CG36 223 aa8.94□□□□□ -0.98
CPSF1-206ENST00000531480 CFC1P0CG37 223 aa8.94□□□□□ -0.98
CPSF1-206ENST00000531480 Q1RN00 199 aa8.94□□□□□ -0.98
CPSF1-206ENST00000531480 MRPL55Q7Z7F7 128 aaKnown RBP8.94□□□□□ -0.98
CPSF1-206ENST00000531480 Q8NDZ9 215 aa8.94□□□□□ -0.98
CPSF1-206ENST00000531480 SNCGO76070 127 aa8.93□□□□□ -0.98
CPSF1-206ENST00000531480 S100A7L2Q5SY68 101 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 1146.6 ms