RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 KCNQ1DNQ9H478 68 aa0.68□□□□□ -2.3
CD44-212ENST00000524922 NDUFA13Q9P0J0 144 aa0.68□□□□□ -2.3
CD44-212ENST00000524922 TRAV9-1A0A075B6T8 112 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 A0A087WXM4 84 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 FXYD6-FXYD2A0A087WZ82 144 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 LOC107984156A0A0G2JMH3 177 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 CTXND1A0A1B0GTU2 59 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 A0A1B0GW15 77 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 IGSF23A1L1A6 192 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 FAM74A7A6NL05 159 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 ARL14EPLP0DKL9 152 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 LGALS3P17931 250 aaKnown RBP0.67□□□□□ -2.3
CD44-212ENST00000524922 G0S2P27469 103 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 GCHFRP30047 84 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 CEBPGP53567 150 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 CKS1BP61024 79 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 HERVK_113P63121 156 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 S100A12P80511 92 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 JOSD1Q15040 202 aaPredicted RBP0.67□□□□□ -2.3
CD44-212ENST00000524922 KRTAP19-8Q3LI54 63 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 PDZD11Q5EBL8 140 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 RNASEKQ6P5S7 137 aaKnown RBP0.67□□□□□ -2.3
CD44-212ENST00000524922 UNQ6190/PRO20217Q6UXQ8 127 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 SMIM15Q7Z3B0 74 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 ARL17AQ8IVW1 177 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 C3orf22Q8N5N4 141 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 NKAPP1Q8N9T2 125 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 MCFD2Q8NI22 146 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 AMELXQ99217 191 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 TMEM191AQ9H0A3 160 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 RBM12B-AS1Q9P1G2 102 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 LAMTOR2Q9Y2Q5 125 aa0.67□□□□□ -2.3
CD44-212ENST00000524922 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.66□□□□□ -2.3
CD44-212ENST00000524922 TRBV10-2A0A0K0K1G8 114 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 IGKV2-29A2NJV5 120 aaPredicted RBP0.66□□□□□ -2.3
CD44-212ENST00000524922 COLCA2A8K830 154 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 CENPXA8MT69 81 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 A8MUU9 505 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 LINC00587B1AMM8 73 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 FAM25AB3EWG3 89 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 FAM25CB3EWG5 89 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 FAM25GB3EWG6 89 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 M0R036 132 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 TCL1BO95988 128 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 PPBPP02775 128 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 SPRR2EP22531 72 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 SPRR2BP35325 72 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 SPRR2AP35326 72 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 IFI27P40305 119 aaPredicted RBP0.66□□□□□ -2.3
CD44-212ENST00000524922 RAB5CP51148 216 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 BCAP31P51572 246 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 GNG5P63218 68 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 DEFB116Q30KQ4 102 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 GATD1Q8NB37 220 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 SCGB1C1Q8TD33 95 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 CNBD2Q96M20 576 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 C2orf88Q9BSF0 95 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 SPRR2GQ9BYE4 73 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 ACTR3CQ9C0K3 210 aaPredicted RBP0.66□□□□□ -2.3
CD44-212ENST00000524922 RNASE7Q9H1E1 156 aaKnown RBP0.66□□□□□ -2.3
CD44-212ENST00000524922 ST20Q9HBF5 79 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 MCUBQ9NWR8 336 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 HSPB11Q9Y547 144 aa0.66□□□□□ -2.3
CD44-212ENST00000524922 TRAV13-1A0A0B4J241 112 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 SMIM30A4D0T7 59 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 UMAD1C9J7I0 102 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 PDE6DO43924 150 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 PFDN1O60925 122 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 PMCHP20382 165 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 SPRR2DP22532 72 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 ATP6V0CP27449 155 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 FCER1GP30273 86 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 BTCP35070 178 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 AKR1C3P42330 323 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 CCL20P78556 96 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 PRLHP81277 87 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 C6orf226Q5I0X4 101 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 C1orf195Q5TG92 126 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 TEX43Q6ZNM6 134 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 Q6ZRX8 168 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 FAM19A1Q7Z5A9 133 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 C5orf38Q86SI9 138 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 AKAP14Q86UN6 197 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 BAGE2Q86Y30 109 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 SMCR5Q8TEV8 140 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 SFT2D1Q8WV19 159 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 TMEM141Q96I45 108 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 TIMM17AQ99595 171 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 MANBALQ9NQG1 85 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 CRIPTQ9P021 101 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 V9GYH0 126 aa0.65□□□□□ -2.31
CD44-212ENST00000524922 IGKV3OR2-268A0A0C4DH90 116 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 A0A0G2JQZ4 141 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 TRBV7-6A0A0J9YX20 115 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 TINCRA0A1B0GVN0 87 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 A8MWL6 223 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 RGS5O15539 181 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 ATP5LO75964 103 aa0.64□□□□□ -2.31
CD44-212ENST00000524922 SNAPINO95295 136 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms