RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TOMM7Q9P0U1 55 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 CYSLTR1Q9Y271 337 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 LAMTOR2Q9Y2Q5 125 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 CSDC2Q9Y534 153 aaKnown RBP2.15□□□□□ -2.07
NUP54-212ENST00000513248 A0A096LNJ9 63 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 A0A0J9YXV3 536 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 MT-ND6P03923 174 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 NDUFA6P56556 154 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 CKS1BP61024 79 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 UBE2BP63146 152 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 MRPS36P82909 103 aaKnown RBP2.14□□□□□ -2.07
NUP54-212ENST00000513248 NDUFA5Q16718 116 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 C6orf226Q5I0X4 101 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 UQCC3Q6UW78 93 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 FA2HQ7L5A8 372 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 Q8N8P6 123 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 OR10D4PQ8NGN7 298 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 SCGB3A1Q96QR1 104 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 PLAC8Q9NZF1 115 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 MYCBP2O75592 4640 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 DNAH17Q9UFH2 4485 aa2.14□□□□□ -2.07
NUP54-212ENST00000513248 TMEM218A2RU14 115 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 K7EMI3 77 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 SEC11AP67812 179 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 FABP9Q0Z7S8 132 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 COX19Q49B96 90 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 C9orf116Q5BN46 136 aaPredicted RBP2.13□□□□□ -2.07
NUP54-212ENST00000513248 UNQ6190/PRO20217Q6UXQ8 127 aa2.13□□□□□ -2.07
NUP54-212ENST00000513248 FAM19A5Q7Z5A7 132 aaPredicted RBP2.13□□□□□ -2.07
NUP54-212ENST00000513248 VPS13DQ5THJ4 4388 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 APOBP04114 4563 aaKnown RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 TRAV9-1A0A075B6T8 112 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 IGHV3OR16-9A0A0B4J2B5 98 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 LINC01549A6NIU2 74 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 UBE2D1P51668 147 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 HERVK_113P63121 156 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 PRR3P79522 188 aaKnown RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 CIRBPQ14011 172 aaKnown RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 KIAA0087Q14695 138 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 RHEBQ15382 184 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 C1orf137Q5JT78 98 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 PHF5AQ7RTV0 110 aaKnown RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 LINC00469Q8N7U9 141 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 SEC11CQ9BY50 192 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 GNB1LQ9BYB4 327 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 MRPL35Q9NZE8 188 aaKnown RBP2.12□□□□□ -2.07
NUP54-212ENST00000513248 TRAPPC1Q9Y5R8 145 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 FAT2Q9NYQ8 4349 aa2.12□□□□□ -2.07
NUP54-212ENST00000513248 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 FAT4Q6V0I7 4981 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 TRBV30A0A0K0K1B3 111 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 A0A1W2PNN7 141 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 H3BRM9 83 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 M0QXV9 152 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 APOC3P02656 99 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 RPL13AP40429 203 aaKnown RBP2.11□□□□□ -2.07
NUP54-212ENST00000513248 PMVKQ15126 192 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 SPINK6Q6UWN8 80 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 C2orf82Q6UX34 121 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 TOMM6Q96B49 74 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 C6orf48Q9UBA6 75 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 DNAH6Q9C0G6 4158 aa2.11□□□□□ -2.07
NUP54-212ENST00000513248 DNAH2Q9P225 4427 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 TINCRA0A1B0GVN0 87 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 NDUFC2-KCTD14E9PQ53 114 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 F8VRH5 84 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 ATP5LO75964 103 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 SPINK8P0C7L1 97 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 ADCYAP1P18509 176 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 CXCL5P42830 114 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 NMUP48645 174 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 KRTAP10-4P60372 401 aaPredicted RBP2.1□□□□□ -2.07
NUP54-212ENST00000513248 RAB5BP61020 215 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 HERVK_113P61574 105 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 IFITM2Q01629 132 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 CAMK2N1Q7Z7J9 78 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 Q8IZM0 81 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 SVBPQ8N300 66 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 COX7B2Q8TF08 81 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 DIRC1Q969H9 104 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 AMELXQ99217 191 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 TIMM17AQ99595 171 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 XAGE1AQ9HD64 81 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 CDKN2A-AS1Q9UH64 79 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 PSORS1C2Q9UIG4 136 aa2.1□□□□□ -2.07
NUP54-212ENST00000513248 IGIPA6NJ69 53 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 H0Y8G0 127 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 HBDP02042 147 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 IGLV7-43P04211 117 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 LINC00614P0C842 121 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 TLX1NBP0CAT3 122 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 KRTAP10-10P60014 251 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 PMCHL1Q16048 86 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 PDZD11Q5EBL8 140 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 TMEM170BQ5T4T1 132 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 LINC00173Q6ZV60 143 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 BAGE3Q86Y29 109 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 CST9LQ9H4G1 147 aa2.09□□□□□ -2.07
NUP54-212ENST00000513248 CARHSP1Q9Y2V2 147 aaKnown RBP2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms