RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PRO0255Q9UI72 69 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 DNAH11Q96DT5 4516 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 PKHD1P08F94 4074 aa5.51□□□□□ -1.53
SCN1A-207ENST00000507401 NDUFC2O95298 119 aa5.51□□□□□ -1.53
SCN1A-207ENST00000507401 S100A7L2Q5SY68 101 aa5.51□□□□□ -1.53
SCN1A-207ENST00000507401 SFTA2Q6UW10 78 aa5.51□□□□□ -1.53
SCN1A-207ENST00000507401 C11orf21Q9P2W6 132 aa5.51□□□□□ -1.53
SCN1A-207ENST00000507401 DYNC1H1Q14204 4646 aaKnown RBP5.5□□□□□ -1.53
SCN1A-207ENST00000507401 TRAV26-2A0A0B4J265 109 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 COX7A2LO14548 114 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 TSHBP01222 138 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 RPL18AQ02543 176 aaKnown RBP5.5□□□□□ -1.53
SCN1A-207ENST00000507401 FHL2Q14192 279 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 ATP5EP2Q5VTU8 51 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 SERP2Q8N6R1 65 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 TIMM21Q9BVV7 248 aa5.5□□□□□ -1.53
SCN1A-207ENST00000507401 IGHV1-58A0A0C4DH39 117 aa5.49□□□□□ -1.53
SCN1A-207ENST00000507401 TSPEAR-AS2P59090 65 aa5.49□□□□□ -1.53
SCN1A-207ENST00000507401 MRPS36P82909 103 aaKnown RBP5.49□□□□□ -1.53
SCN1A-207ENST00000507401 PIK3CD-AS1Q5SR53 167 aa5.49□□□□□ -1.53
SCN1A-207ENST00000507401 LYPD5Q6UWN5 251 aa5.49□□□□□ -1.53
SCN1A-207ENST00000507401 KIF25-AS1Q9Y6Z4 181 aa5.49□□□□□ -1.53
SCN1A-207ENST00000507401 TRGV4A0A0C4DH28 118 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 IGHV3-16A0A0C4DH30 117 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 TINCRA0A1B0GVN0 87 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 I3L3M4 83 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 GNRH2O43555 120 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 MGPP08493 103 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 Q6JHZ5 121 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 C14orf178Q8N769 122 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-207ENST00000507401 C20orf203Q8NBC4 194 aa5.48□□□□□ -1.53
SCN1A-207ENST00000507401 RPL39LQ96EH5 51 aaKnown RBP5.48□□□□□ -1.53
SCN1A-207ENST00000507401 IGHV3-53P01767 116 aa5.47□□□□□ -1.53
SCN1A-207ENST00000507401 LINC00315P59091 139 aa5.47□□□□□ -1.53
SCN1A-207ENST00000507401 LITAFQ99732 161 aa5.47□□□□□ -1.53
SCN1A-207ENST00000507401 KRTAP1-5Q9BYS1 174 aa5.47□□□□□ -1.53
SCN1A-207ENST00000507401 NDUFA12Q9UI09 145 aa5.47□□□□□ -1.53
SCN1A-207ENST00000507401 H7C2G1 150 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 K7EQD1 137 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 NDUFA1O15239 70 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 PRSS2P07478 247 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 IGHV3-30-3P0DP02 117 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 C2orf48Q96LS8 159 aa5.46□□□□□ -1.54
SCN1A-207ENST00000507401 TRAV13-2A0A0B4J235 113 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 TRBV10-3A0A0K0K1G6 114 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 C16orf90A8MZG2 172 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 CDK2AP2O75956 126 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 GYPEP15421 78 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 TIRAPP58753 221 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 SUMO4Q6EEV6 95 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 DPH3Q96FX2 82 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 PCLOQ9Y6V0 5065 aa5.45□□□□□ -1.54
SCN1A-207ENST00000507401 IGLV4-3A0A075B6K6 122 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 TRAV8-3A0A0A6YYJ7 113 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 TRAV13-1A0A0B4J241 112 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 H0YGX0 51 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 RS1O15537 224 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 DNAL4O96015 105 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 RNASE3P12724 160 aaKnown RBP5.44□□□□□ -1.54
SCN1A-207ENST00000507401 ATP5EP56381 51 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-207ENST00000507401 Q6ZRN7 208 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-207ENST00000507401 C9orf85Q96MD7 179 aa5.44□□□□□ -1.54
SCN1A-207ENST00000507401 RYR1P21817 5038 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 IGLV5-45A0A087WSX0 123 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 TRBV6-4A0A1B0GX49 114 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 hADV29S1A0JD25 119 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 ZNF561-AS1K7EIQ3 104 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 M0QY20 66 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 DNAH10OSP0CZ25 163 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 PRO0628Q9UI54 55 aa5.43□□□□□ -1.54
SCN1A-207ENST00000507401 F5H697 171 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 BAALC-AS2P0C853 105 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 MALP21145 153 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 NPC2P61916 151 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 RPL39P62891 51 aaKnown RBP5.42□□□□□ -1.54
SCN1A-207ENST00000507401 FAM19A3Q7Z5A8 133 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 DAZ4Q86SG3 579 aaKnown RBP5.42□□□□□ -1.54
SCN1A-207ENST00000507401 Q8N1X5 172 aa5.42□□□□□ -1.54
SCN1A-207ENST00000507401 DAZ3Q9NR90 486 aaKnown RBP5.42□□□□□ -1.54
SCN1A-207ENST00000507401 LRP1BQ9NZR2 4599 aa5.41□□□□□ -1.54
SCN1A-207ENST00000507401 F8WDY8 70 aa5.41□□□□□ -1.54
SCN1A-207ENST00000507401 NDUFC1O43677 76 aa5.41□□□□□ -1.54
SCN1A-207ENST00000507401 RPL28P46779 137 aaKnown RBP5.41□□□□□ -1.54
SCN1A-207ENST00000507401 OBSCN-AS1Q96MR7 158 aa5.41□□□□□ -1.54
SCN1A-207ENST00000507401 SERP1Q9Y6X1 66 aa5.41□□□□□ -1.54
SCN1A-207ENST00000507401 IGHV3-38A0A0C4DH36 116 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 A0A0J9YXV3 536 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 H3BQ85 93 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 LINC01556Q5JQF7 62 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 WFDC10BQ8IUB3 73 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 LINC00308Q8TCZ7 52 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 CLEC2BQ92478 149 aa5.4□□□□□ -1.54
SCN1A-207ENST00000507401 DNAH5Q8TE73 4624 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 IGLV5-39A0A0G2JS06 123 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 LOC100131303A0A0U1RQF7 123 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 LOC107984640A0A0U1RRK4 108 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 EPM2AB3EWF7 344 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 JMJD7-PLA2G4BH0Y9G9 81 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 LELP1Q5T871 98 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 SMCR5Q8TEV8 140 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms