RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
SQSTM1-209ENST00000504627 MEIG1Q5JSS6 88 aa11.46□□□□□ -0.57
SQSTM1-209ENST00000504627 SPANXB1Q9NS25 103 aaPredicted RBP11.46□□□□□ -0.57
SQSTM1-209ENST00000504627 OXTP01178 125 aa11.45□□□□□ -0.58
SQSTM1-209ENST00000504627 CHTF8P0CG12 524 aa11.45□□□□□ -0.58
SQSTM1-209ENST00000504627 LITAFQ99732 161 aa11.45□□□□□ -0.58
SQSTM1-209ENST00000504627 ERG28Q9UKR5 140 aa11.45□□□□□ -0.58
SQSTM1-209ENST00000504627 FAT3Q8TDW7 4589 aa11.44□□□□□ -0.58
SQSTM1-209ENST00000504627 HSD52Q0P140 79 aa11.44□□□□□ -0.58
SQSTM1-209ENST00000504627 SYCNQ0VAF6 134 aa11.44□□□□□ -0.58
SQSTM1-209ENST00000504627 UNQ6190/PRO20217Q6UXQ8 127 aa11.44□□□□□ -0.58
SQSTM1-209ENST00000504627 CARD19Q96LW7 228 aa11.44□□□□□ -0.58
SQSTM1-209ENST00000504627 A0A087WYN8 130 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 PCP4L1A6NKN8 68 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 COX17Q14061 63 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 TAL2Q16559 108 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 C10orf25Q5T742 122 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 Q6ZRU5 148 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 Q6ZVH6 145 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 SPACA4Q8TDM5 124 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 SPANXDQ9BXN6 97 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 SPANXCQ9NY87 97 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 C6orf48Q9UBA6 75 aa11.43□□□□□ -0.58
SQSTM1-209ENST00000504627 SMIM13P0DJ93 91 aa11.41□□□□□ -0.58
SQSTM1-209ENST00000504627 RNF151Q2KHN1 245 aa11.41□□□□□ -0.58
SQSTM1-209ENST00000504627 PKHD1L1Q86WI1 4243 aa11.4□□□□□ -0.58
SQSTM1-209ENST00000504627 IGKV2-24A0A0C4DH68 120 aa11.4□□□□□ -0.58
SQSTM1-209ENST00000504627 CTAG1AP78358 180 aa11.4□□□□□ -0.58
SQSTM1-209ENST00000504627 HIST1H4GQ99525 98 aa11.4□□□□□ -0.58
SQSTM1-209ENST00000504627 SRSF9Q13242 221 aaKnown RBP eCLIP11.39□□□□□ -0.59
SQSTM1-209ENST00000504627 PFN2P35080 140 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 LINC00158P58513 81 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 ADAMTSL4-AS1Q5T5F5 129 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 C7orf33Q8WU49 177 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 COPS9Q8WXC6 57 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 PPDPFQ9H3Y8 114 aa11.38□□□□□ -0.59
SQSTM1-209ENST00000504627 M0R143 59 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 IFITM1P13164 125 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 C9orf116Q5BN46 136 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 SERTAD4-AS1Q5TG53 156 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 MIR7-3HGQ8N6C7 128 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 PLAC8Q9NZF1 115 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 PKIGQ9Y2B9 76 aa11.37□□□□□ -0.59
SQSTM1-209ENST00000504627 A0A0U1RRA0 63 aa11.36□□□□□ -0.59
SQSTM1-209ENST00000504627 TLX1NBP0CAT3 122 aa11.36□□□□□ -0.59
SQSTM1-209ENST00000504627 PTTG1IPP53801 180 aa11.36□□□□□ -0.59
SQSTM1-209ENST00000504627 NDUFC2-KCTD14E9PQ53 114 aa11.35□□□□□ -0.59
SQSTM1-209ENST00000504627 CEND1Q8N111 149 aa11.35□□□□□ -0.59
SQSTM1-209ENST00000504627 DAND5Q8N907 189 aa11.35□□□□□ -0.59
SQSTM1-209ENST00000504627 A0A096LNI7 61 aa11.33□□□□□ -0.6
SQSTM1-209ENST00000504627 BVES-AS1Q5T3Y7 98 aa11.33□□□□□ -0.6
SQSTM1-209ENST00000504627 LINC00308Q8TCZ7 52 aa11.33□□□□□ -0.6
SQSTM1-209ENST00000504627 LINC00474Q9P2X8 69 aa11.33□□□□□ -0.6
SQSTM1-209ENST00000504627 TMEM238LA0A1B0GVL6 79 aa11.32□□□□□ -0.6
SQSTM1-209ENST00000504627 A6NJY4 79 aa11.32□□□□□ -0.6
SQSTM1-209ENST00000504627 RPL24P83731 157 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-209ENST00000504627 LOC107984156A0A0G2JMH3 177 aa11.31□□□□□ -0.6
SQSTM1-209ENST00000504627 HINT1P49773 126 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-209ENST00000504627 MUSTN1Q8IVN3 82 aa11.31□□□□□ -0.6
SQSTM1-209ENST00000504627 ARL17AQ8IVW1 177 aa11.31□□□□□ -0.6
SQSTM1-209ENST00000504627 SND1-IT1Q9HBX3 110 aa11.31□□□□□ -0.6
SQSTM1-209ENST00000504627 LOC107984640A0A0U1RRK4 108 aa11.3□□□□□ -0.6
SQSTM1-209ENST00000504627 FXYD2P54710 66 aa11.3□□□□□ -0.6
SQSTM1-209ENST00000504627 SOSTDC1Q6X4U4 206 aa11.3□□□□□ -0.6
SQSTM1-209ENST00000504627 NPC2P61916 151 aa11.29□□□□□ -0.6
SQSTM1-209ENST00000504627 HMCN2Q8NDA2 5059 aa11.28□□□□□ -0.6
SQSTM1-209ENST00000504627 RPL18AQ02543 176 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-209ENST00000504627 Q6ZRP5 223 aa11.28□□□□□ -0.6
SQSTM1-209ENST00000504627 A4D1N5 150 aa11.26□□□□□ -0.61
SQSTM1-209ENST00000504627 EIF4EBP3O60516 100 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-209ENST00000504627 GAGE2BQ13066 116 aa11.26□□□□□ -0.61
SQSTM1-209ENST00000504627 SNHG12Q9BXW3 62 aa11.26□□□□□ -0.61
SQSTM1-209ENST00000504627 A6NDN8 102 aa11.25□□□□□ -0.61
SQSTM1-209ENST00000504627 BATFQ16520 125 aa11.25□□□□□ -0.61
SQSTM1-209ENST00000504627 GAGE2EQ4V326 116 aa11.25□□□□□ -0.61
SQSTM1-209ENST00000504627 GAGE2DQ9UEU5 116 aa11.25□□□□□ -0.61
SQSTM1-209ENST00000504627 PLA2G2DQ9UNK4 145 aa11.25□□□□□ -0.61
SQSTM1-209ENST00000504627 NDUFC2O95298 119 aa11.24□□□□□ -0.61
SQSTM1-209ENST00000504627 PRR3P79522 188 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-209ENST00000504627 XAGE1AQ9HD64 81 aa11.24□□□□□ -0.61
SQSTM1-209ENST00000504627 A0A0B4J2C4 111 aa11.23□□□□□ -0.61
SQSTM1-209ENST00000504627 A0A1B0GWB2 263 aa11.23□□□□□ -0.61
SQSTM1-209ENST00000504627 NHP2Q9NX24 153 aaKnown RBP11.22□□□□□ -0.61
SQSTM1-209ENST00000504627 MT1HL1P0DM35 61 aa11.21□□□□□ -0.61
SQSTM1-209ENST00000504627 C9orf129Q5T035 196 aaKnown RBP11.21□□□□□ -0.61
SQSTM1-209ENST00000504627 CFC1BP0CG36 223 aa11.19□□□□□ -0.62
SQSTM1-209ENST00000504627 CFC1P0CG37 223 aa11.19□□□□□ -0.62
SQSTM1-209ENST00000504627 RAB37Q96AX2 223 aa11.18□□□□□ -0.62
SQSTM1-209ENST00000504627 IGKV2-28A0A075B6P5 120 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 TRBV10-2A0A0K0K1G8 114 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 K7ERJ3 54 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 IGKV2D-28P01615 120 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 VPREB1P12018 145 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 COL5A1-AS1Q5SY13 56 aa11.17□□□□□ -0.62
SQSTM1-209ENST00000504627 TRAV13-2A0A0B4J235 113 aa11.16□□□□□ -0.62
SQSTM1-209ENST00000504627 LBHQ53QV2 105 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-209ENST00000504627 SPINK6Q6UWN8 80 aa11.16□□□□□ -0.62
SQSTM1-209ENST00000504627 Q8NDZ9 215 aa11.16□□□□□ -0.62
SQSTM1-209ENST00000504627 IGLV5-37A0A075B6J1 123 aa11.15□□□□□ -0.62
SQSTM1-209ENST00000504627 A0A1W2PNN7 141 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms