RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 SAMD9LQ8IVG5 1584 aa2.57□□□□□ -2
NIPBL-204ENST00000504430 IGFL1Q6UW32 110 aa2.57□□□□□ -2
NIPBL-204ENST00000504430 NRAPQ86VF7 1730 aa2.57□□□□□ -2
NIPBL-204ENST00000504430 NHSQ6T4R5 1651 aa2.57□□□□□ -2
NIPBL-204ENST00000504430 SLIT1O75093 1534 aa2.56□□□□□ -2
NIPBL-204ENST00000504430 Q6ZQY7 126 aa2.56□□□□□ -2
NIPBL-204ENST00000504430 RPL38P63173 70 aaKnown RBP2.56□□□□□ -2
NIPBL-204ENST00000504430 GAFA1Q96PS6 74 aa2.56□□□□□ -2
NIPBL-204ENST00000504430 TTTY10Q9BZA0 68 aa2.56□□□□□ -2
NIPBL-204ENST00000504430 CPSF4LA6NMK7 179 aaKnown RBP2.55□□□□□ -2
NIPBL-204ENST00000504430 LY6G6CO95867 125 aa2.55□□□□□ -2
NIPBL-204ENST00000504430 HAMPP81172 84 aa2.55□□□□□ -2
NIPBL-204ENST00000504430 DOT1LQ8TEK3 1739 aa2.55□□□□□ -2
NIPBL-204ENST00000504430 DEPDC5O75140 1603 aa2.55□□□□□ -2
NIPBL-204ENST00000504430 G3V318 75 aa2.55□□□□□ -2
NIPBL-204ENST00000504430 CICQ96RK0 1608 aaPredicted RBP2.54□□□□□ -2
NIPBL-204ENST00000504430 TRBV30A0A0K0K1B3 111 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 SSBP3-AS1Q7Z2R9 100 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 CACNA1BQ00975 2339 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 C4AP0C0L4 1744 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 C4BP0C0L5 1744 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 CRIPTQ9P021 101 aa2.54□□□□□ -2
NIPBL-204ENST00000504430 A0A096LNT2 108 aa2.53□□□□□ -2
NIPBL-204ENST00000504430 A0A1B0GU69 56 aa2.53□□□□□ -2
NIPBL-204ENST00000504430 M0R2N4 97 aa2.53□□□□□ -2
NIPBL-204ENST00000504430 DOPEY2Q9Y3R5 2298 aa2.53□□□□□ -2.01
NIPBL-204ENST00000504430 H3BSH0 61 aa2.52□□□□□ -2.01
NIPBL-204ENST00000504430 COL6A6A6NMZ7 2263 aa2.52□□□□□ -2.01
NIPBL-204ENST00000504430 TRBV6-1A0A0K0K1D8 114 aa2.52□□□□□ -2.01
NIPBL-204ENST00000504430 CACNA1EQ15878 2313 aa2.52□□□□□ -2.01
NIPBL-204ENST00000504430 FAM208AQ9UK61 1670 aaKnown RBP2.51□□□□□ -2.01
NIPBL-204ENST00000504430 PDE4DIPQ5VU43 2346 aa2.51□□□□□ -2.01
NIPBL-204ENST00000504430 PIN1P1O15428 100 aa2.51□□□□□ -2.01
NIPBL-204ENST00000504430 PLCE1Q9P212 2302 aa2.5□□□□□ -2.01
NIPBL-204ENST00000504430 CNOT1A5YKK6 2376 aaKnown RBP2.5□□□□□ -2.01
NIPBL-204ENST00000504430 SERF2P84101 59 aa2.49□□□□□ -2.01
NIPBL-204ENST00000504430 BRD3OSQ6XYD6 125 aa2.49□□□□□ -2.01
NIPBL-204ENST00000504430 Q6ZRX8 168 aa2.49□□□□□ -2.01
NIPBL-204ENST00000504430 C3P01024 1663 aa2.49□□□□□ -2.01
NIPBL-204ENST00000504430 SSC5DA1L4H1 1573 aa2.49□□□□□ -2.01
NIPBL-204ENST00000504430 LCE6AA0A183 80 aa2.48□□□□□ -2.01
NIPBL-204ENST00000504430 KRTAP10-1P60331 282 aa2.48□□□□□ -2.01
NIPBL-204ENST00000504430 KRTAP10-3P60369 221 aa2.48□□□□□ -2.01
NIPBL-204ENST00000504430 NDUFB1O75438 58 aa2.48□□□□□ -2.01
NIPBL-204ENST00000504430 FBN1P35555 2871 aaKnown RBP2.48□□□□□ -2.01
NIPBL-204ENST00000504430 PIEZO2Q9H5I5 2752 aa2.48□□□□□ -2.01
NIPBL-204ENST00000504430 TJP1Q07157 1748 aa2.47□□□□□ -2.01
NIPBL-204ENST00000504430 M0R1W7 72 aa2.47□□□□□ -2.01
NIPBL-204ENST00000504430 NDUFA4O00483 81 aa2.46□□□□□ -2.02
NIPBL-204ENST00000504430 ARL14EPLP0DKL9 152 aa2.46□□□□□ -2.02
NIPBL-204ENST00000504430 COX17Q14061 63 aa2.46□□□□□ -2.02
NIPBL-204ENST00000504430 SMIM27A0A1W2PRY6 76 aa2.45□□□□□ -2.02
NIPBL-204ENST00000504430 GVQW2A0A096LPI5 108 aaPredicted RBP2.45□□□□□ -2.02
NIPBL-204ENST00000504430 KRTAP13-4Q3LI77 160 aa2.45□□□□□ -2.02
NIPBL-204ENST00000504430 LCE1EQ5T753 118 aa2.45□□□□□ -2.02
NIPBL-204ENST00000504430 ASH1LQ9NR48 2969 aaKnown RBP2.45□□□□□ -2.02
NIPBL-204ENST00000504430 OTOGLQ3ZCN5 2332 aa2.45□□□□□ -2.02
NIPBL-204ENST00000504430 A0A1B0GVY2 172 aa2.45□□□□□ -2.02
NIPBL-204ENST00000504430 KRTAP1-1Q07627 177 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 UBL5Q9BZL1 73 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 PLXNB2O15031 1838 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 IAPPP10997 89 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 COX7BP24311 80 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 DUOX1Q9NRD9 1551 aa2.44□□□□□ -2.02
NIPBL-204ENST00000504430 QSER1Q2KHR3 1735 aa2.43□□□□□ -2.02
NIPBL-204ENST00000504430 PLAC4Q8WY50 150 aa2.43□□□□□ -2.02
NIPBL-204ENST00000504430 CCL22O00626 93 aa2.43□□□□□ -2.02
NIPBL-204ENST00000504430 NDUFA3O95167 84 aa2.43□□□□□ -2.02
NIPBL-204ENST00000504430 DDX60LQ5H9U9 1706 aaKnown RBP2.43□□□□□ -2.02
NIPBL-204ENST00000504430 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.43□□□□□ -2.02
NIPBL-204ENST00000504430 LOC730098B7Z3J9 87 aa2.42□□□□□ -2.02
NIPBL-204ENST00000504430 PP632Q6XCG6 107 aa2.41□□□□□ -2.02
NIPBL-204ENST00000504430 SMIM11BQ8TCY0 68 aa2.41□□□□□ -2.02
NIPBL-204ENST00000504430 KMT2BQ9UMN6 2715 aaPredicted RBP2.41□□□□□ -2.02
NIPBL-204ENST00000504430 ARHGAP5-AS1Q96IT6 56 aa2.4□□□□□ -2.02
NIPBL-204ENST00000504430 COL4A4P53420 1690 aaPredicted RBP2.4□□□□□ -2.02
NIPBL-204ENST00000504430 TFF3Q07654 80 aa2.4□□□□□ -2.03
NIPBL-204ENST00000504430 LY75O60449 1722 aa2.4□□□□□ -2.03
NIPBL-204ENST00000504430 I3L3M4 83 aa2.4□□□□□ -2.03
NIPBL-204ENST00000504430 DDX60Q8IY21 1712 aaKnown RBP2.39□□□□□ -2.03
NIPBL-204ENST00000504430 PLNP26678 52 aa2.39□□□□□ -2.03
NIPBL-204ENST00000504430 FAM208BQ5VWN6 2430 aa2.38□□□□□ -2.03
NIPBL-204ENST00000504430 KNL1Q8NG31 2342 aa2.38□□□□□ -2.03
NIPBL-204ENST00000504430 CNTRLQ7Z7A1 2325 aa2.38□□□□□ -2.03
NIPBL-204ENST00000504430 RPS27P42677 84 aaKnown RBP2.38□□□□□ -2.03
NIPBL-204ENST00000504430 KRTAP12-1P59990 96 aa2.38□□□□□ -2.03
NIPBL-204ENST00000504430 KRTAP12-2P59991 146 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 KRTAP13-3Q3SY46 172 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 TOGARAM1Q9Y4F4 1720 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 NCR3O14931 201 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 TMEM167BQ9NRX6 74 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 LMO7Q8WWI1 1683 aa2.37□□□□□ -2.03
NIPBL-204ENST00000504430 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
NIPBL-204ENST00000504430 TRIOBPQ9H2D6 2365 aa2.36□□□□□ -2.03
NIPBL-204ENST00000504430 NRXN3Q9Y4C0 1643 aa2.36□□□□□ -2.03
NIPBL-204ENST00000504430 IGIPA6NJ69 53 aa2.36□□□□□ -2.03
NIPBL-204ENST00000504430 PRB3Q04118 309 aaPredicted RBP2.36□□□□□ -2.03
NIPBL-204ENST00000504430 DEFB103AP81534 67 aa2.34□□□□□ -2.03
NIPBL-204ENST00000504430 CRIP1P50238 77 aa2.34□□□□□ -2.03
NIPBL-204ENST00000504430 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms