RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SPATA45Q537H7 98 aa9.78□□□□□ -0.84
VIM-208ENST00000497849 HERVK_113P61574 105 aa9.77□□□□□ -0.85
VIM-208ENST00000497849 LINC00469Q8N7U9 141 aa9.77□□□□□ -0.85
VIM-208ENST00000497849 CAMK2N2Q96S95 79 aa9.77□□□□□ -0.85
VIM-208ENST00000497849 IGLV5-45A0A087WSX0 123 aa9.76□□□□□ -0.85
VIM-208ENST00000497849 H3BRM9 83 aa9.76□□□□□ -0.85
VIM-208ENST00000497849 ANKRD39Q53RE8 183 aa9.76□□□□□ -0.85
VIM-208ENST00000497849 FAM168BA1KXE4 195 aa9.75□□□□□ -0.85
VIM-208ENST00000497849 ORAOV1Q8WV07 137 aa9.75□□□□□ -0.85
VIM-208ENST00000497849 TMEM223A0PJW6 202 aa9.74□□□□□ -0.85
VIM-208ENST00000497849 SPINK8P0C7L1 97 aa9.74□□□□□ -0.85
VIM-208ENST00000497849 SPAG11BQ08648 103 aa9.74□□□□□ -0.85
VIM-208ENST00000497849 C2orf48Q96LS8 159 aa9.74□□□□□ -0.85
VIM-208ENST00000497849 E9PLD3 99 aa9.72□□□□□ -0.85
VIM-208ENST00000497849 PRO1933Q9H354 126 aa9.72□□□□□ -0.85
VIM-208ENST00000497849 TOMM7Q9P0U1 55 aa9.72□□□□□ -0.85
VIM-208ENST00000497849 SMIM1B2RUZ4 78 aa9.71□□□□□ -0.86
VIM-208ENST00000497849 NMUP48645 174 aa9.71□□□□□ -0.86
VIM-208ENST00000497849 KIAA0087Q14695 138 aa9.71□□□□□ -0.86
VIM-208ENST00000497849 KRTAP7-1Q8IUC3 87 aa9.71□□□□□ -0.86
VIM-208ENST00000497849 LINC01561Q8N1V8 128 aa9.71□□□□□ -0.86
VIM-208ENST00000497849 IGKV2D-26A0A0A0MRZ7 120 aa9.7□□□□□ -0.86
VIM-208ENST00000497849 TSTD3H0UI37 97 aa9.7□□□□□ -0.86
VIM-208ENST00000497849 RNF151Q2KHN1 245 aa9.7□□□□□ -0.86
VIM-208ENST00000497849 PLEKHB2Q96CS7 222 aa9.7□□□□□ -0.86
VIM-208ENST00000497849 LEPROTO15243 131 aa9.69□□□□□ -0.86
VIM-208ENST00000497849 COX8AP10176 69 aa9.69□□□□□ -0.86
VIM-208ENST00000497849 C10orf25Q5T742 122 aa9.69□□□□□ -0.86
VIM-208ENST00000497849 C2orf82Q6UX34 121 aa9.69□□□□□ -0.86
VIM-208ENST00000497849 FAM19A5Q7Z5A7 132 aaPredicted RBP9.69□□□□□ -0.86
VIM-208ENST00000497849 C14orf144Q96I85 54 aa9.69□□□□□ -0.86
VIM-208ENST00000497849 UNQ6190/PRO20217Q6UXQ8 127 aa9.68□□□□□ -0.86
VIM-208ENST00000497849 IGLV5-39A0A0G2JS06 123 aa9.67□□□□□ -0.86
VIM-208ENST00000497849 J3QQQ9 107 aa9.67□□□□□ -0.86
VIM-208ENST00000497849 LGALS3P17931 250 aaKnown RBP9.67□□□□□ -0.86
VIM-208ENST00000497849 C6orf226Q5I0X4 101 aa9.67□□□□□ -0.86
VIM-208ENST00000497849 SLC25A34Q6PIV7 304 aa9.67□□□□□ -0.86
VIM-208ENST00000497849 UQCR10Q9UDW1 63 aa9.67□□□□□ -0.86
VIM-208ENST00000497849 PRSS2P07478 247 aa9.66□□□□□ -0.86
VIM-208ENST00000497849 PCP2Q8IVA1 136 aa9.66□□□□□ -0.86
VIM-208ENST00000497849 COX7B2Q8TF08 81 aa9.66□□□□□ -0.86
VIM-208ENST00000497849 A0A087X002 238 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 DLEU1O43261 78 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 TSPEAR-AS2P59090 65 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 RETNLBQ9BQ08 111 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 MIEN1Q9BRT3 115 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 TTTY13Q9BZ97 58 aa9.65□□□□□ -0.86
VIM-208ENST00000497849 UBE2BP63146 152 aa9.64□□□□□ -0.87
VIM-208ENST00000497849 Q8IZM0 81 aa9.64□□□□□ -0.87
VIM-208ENST00000497849 CDIP1Q9H305 208 aa9.64□□□□□ -0.87
VIM-208ENST00000497849 C6orf48Q9UBA6 75 aa9.64□□□□□ -0.87
VIM-208ENST00000497849 MYMXA0A1B0GTQ4 84 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 ZNF815PA8K554 130 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 M0QXV9 152 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 NDUFA1O15239 70 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 ZNF861PO60384 105 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 TLX1NBP0CAT3 122 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 CKS1BP61024 79 aa9.63□□□□□ -0.87
VIM-208ENST00000497849 PCP4L1A6NKN8 68 aa9.62□□□□□ -0.87
VIM-208ENST00000497849 TPRXLQ17RH7 258 aa9.62□□□□□ -0.87
VIM-208ENST00000497849 GAGE2EQ4V326 116 aa9.61□□□□□ -0.87
VIM-208ENST00000497849 GAGE2DQ9UEU5 116 aa9.61□□□□□ -0.87
VIM-208ENST00000497849 NDUFA12Q9UI09 145 aa9.61□□□□□ -0.87
VIM-208ENST00000497849 TP73-AS1Q9UF72 201 aa9.6□□□□□ -0.87
VIM-208ENST00000497849 F8WDY8 70 aa9.59□□□□□ -0.87
VIM-208ENST00000497849 DDTP30046 118 aa9.59□□□□□ -0.87
VIM-208ENST00000497849 TYMSOSQ8TAI1 123 aa9.59□□□□□ -0.87
VIM-208ENST00000497849 SCGB1D4Q6XE38 83 aa9.58□□□□□ -0.88
VIM-208ENST00000497849 ZNF625Q96I27 306 aaPredicted RBP9.58□□□□□ -0.88
VIM-208ENST00000497849 SFTA2Q6UW10 78 aa9.57□□□□□ -0.88
VIM-208ENST00000497849 TRBV30A0A0K0K1B3 111 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 CRYGAP11844 174 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 CXCL5P42830 114 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 HERV-K104P63124 156 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 C2orf91Q6ZV80 131 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 HIGD1BQ9P298 99 aa9.56□□□□□ -0.88
VIM-208ENST00000497849 A0A0J9YXY3 114 aa9.55□□□□□ -0.88
VIM-208ENST00000497849 LINC01547P58512 204 aaPredicted RBP9.55□□□□□ -0.88
VIM-208ENST00000497849 C9orf129Q5T035 196 aaKnown RBP9.55□□□□□ -0.88
VIM-208ENST00000497849 IGLV7-46A0A075B6I9 117 aa9.54□□□□□ -0.88
VIM-208ENST00000497849 PFN2P35080 140 aa9.53□□□□□ -0.88
VIM-208ENST00000497849 CTAG1AP78358 180 aa9.53□□□□□ -0.88
VIM-208ENST00000497849 A0A0U1RRA0 63 aa9.52□□□□□ -0.89
VIM-208ENST00000497849 KRTAP13-2Q52LG2 175 aa9.52□□□□□ -0.89
VIM-208ENST00000497849 MEIG1Q5JSS6 88 aa9.52□□□□□ -0.89
VIM-208ENST00000497849 ANAPC11Q9NYG5 84 aa9.52□□□□□ -0.89
VIM-208ENST00000497849 LINC00587B1AMM8 73 aa9.51□□□□□ -0.89
VIM-208ENST00000497849 NDUFC2-KCTD14E9PQ53 114 aa9.51□□□□□ -0.89
VIM-208ENST00000497849 TIMM17BO60830 172 aa9.51□□□□□ -0.89
VIM-208ENST00000497849 TMEM238C9JI98 176 aa9.5□□□□□ -0.89
VIM-208ENST00000497849 HSD52Q0P140 79 aa9.5□□□□□ -0.89
VIM-208ENST00000497849 XAGE1AQ9HD64 81 aa9.5□□□□□ -0.89
VIM-208ENST00000497849 SPANXB1Q9NS25 103 aaPredicted RBP9.5□□□□□ -0.89
VIM-208ENST00000497849 ERG28Q9UKR5 140 aa9.5□□□□□ -0.89
VIM-208ENST00000497849 TAL2Q16559 108 aa9.49□□□□□ -0.89
VIM-208ENST00000497849 HIST1H4GQ99525 98 aa9.49□□□□□ -0.89
VIM-208ENST00000497849 KRTAP4-1Q9BYQ7 146 aa9.49□□□□□ -0.89
VIM-208ENST00000497849 SMIM13P0DJ93 91 aa9.48□□□□□ -0.89
VIM-208ENST00000497849 LINC00158P58513 81 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms