RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 DYNAPQ8N1N2 210 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 Q8N8P6 123 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 CELSR1Q9NYQ6 3014 aa2.59□□□□□ -2
SF3B1-212ENST00000496458 JMJD1CQ15652 2540 aa2.59□□□□□ -2
SF3B1-212ENST00000496458 F8P00451 2351 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 SONP18583 2426 aaKnown RBP2.58□□□□□ -2
SF3B1-212ENST00000496458 TRBV7-1A0A0A6YYK4 115 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.58□□□□□ -2
SF3B1-212ENST00000496458 TRBV27A0A0K0K1C4 114 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 TRBV6-1A0A0K0K1D8 114 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 A0A1B0GUT8 65 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 A0A1W2PQD3 144 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 IBA57-AS1B1ANH7 110 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 H3BSH0 61 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 IGLV3-1P01715 115 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 IGHV3-33P01772 117 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 FAM229BQ4G0N7 80 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 Q6JHZ5 121 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 ZNF818PQ6ZRF7 136 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 CYSTM1Q9H1C7 97 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 HIVEP1P15822 2718 aa2.58□□□□□ -2
SF3B1-212ENST00000496458 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.58□□□□□ -29e-6■■□□□ 12.6
SF3B1-212ENST00000496458 PDZD2O15018 2839 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 IGKV1D-42A0A075B6H8 117 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 TRAV3A0A0B4J244 114 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 H7BZZ5 65 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 COX6CP09669 75 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 EDDM3BP56851 147 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 KRTAP12-4P60329 112 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 MIC13Q5XKP0 118 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 Q8NDZ9 215 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 C1orf64Q8NEQ6 169 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 NABP2Q9BQ15 211 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 SLC50A1Q9BRV3 221 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 TTTY12Q9BZ98 90 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 PROK2Q9HC23 129 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 WNK2Q9Y3S1 2297 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 ABCA2Q9BZC7 2435 aa2.57□□□□□ -2
SF3B1-212ENST00000496458 FBN2P35556 2912 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 IGHV3OR16-8A0A075B7F1 116 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 A0A1B0GU33 70 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 IQCF6A8MYZ5 107 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 H3BPC8 53 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 M0R135 149 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 TIMM17BO60830 172 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 CCKP06307 115 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 ZNF22P17026 224 aaPredicted RBP2.56□□□□□ -2
SF3B1-212ENST00000496458 RPS27P42677 84 aaKnown RBP2.56□□□□□ -2
SF3B1-212ENST00000496458 RPL28P46779 137 aaKnown RBP2.56□□□□□ -2
SF3B1-212ENST00000496458 SNRPD3P62318 126 aaKnown RBP2.56□□□□□ -2
SF3B1-212ENST00000496458 KLKP1Q107X0 134 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 ATP5EP2Q5VTU8 51 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 C7orf65Q6ZTY9 151 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 Q8N2B8 174 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 Q8NAQ8 132 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 FAM215AQ9Y5M1 114 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 C2CD3Q4AC94 2353 aa2.56□□□□□ -2
SF3B1-212ENST00000496458 OTOGQ6ZRI0 2925 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 CSMD1Q96PZ7 3565 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 TRAV13-2A0A0B4J235 113 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 TRBV10-3A0A0K0K1G6 114 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 F8VRH5 84 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 K7EMI3 77 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 IGHV3-30P01768 117 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 IGHV3-30-5P0DP03 117 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 COX6B1P14854 86 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 FUSP35637 526 aaKnown RBP eCLIP2.55□□□□□ -2
SF3B1-212ENST00000496458 PATE2Q6UY27 113 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 SOSTDC1Q6X4U4 206 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 TMEM263Q8WUH6 116 aaKnown RBP2.55□□□□□ -2
SF3B1-212ENST00000496458 ZNF714Q96N38 554 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 TIMM21Q9BVV7 248 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 MRPL35Q9NZE8 188 aaKnown RBP2.55□□□□□ -2
SF3B1-212ENST00000496458 ATRQ13535 2644 aa2.55□□□□□ -2
SF3B1-212ENST00000496458 ABCA1O95477 2261 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 NF1P21359 2839 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 IGLV3-9A0A075B6K5 115 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 TRAV7A0A075B6U4 112 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 A0A0J9YY99 117 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 ZNF815PA8K554 130 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 DEFA4P12838 97 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 CKS2P33552 79 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 ZNF137PP52743 207 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 PLGLAQ15195 96 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 S100A7L2Q5SY68 101 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 DIRC1Q969H9 104 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 UBE2D4Q9Y2X8 147 aa2.54□□□□□ -2
SF3B1-212ENST00000496458 TIMM8BQ9Y5J9 83 aaPredicted RBP2.54□□□□□ -2
SF3B1-212ENST00000496458 NSD1Q96L73 2696 aaPredicted RBP2.54□□□□□ -2
SF3B1-212ENST00000496458 IGLV3-32A0A0A0MS00 114 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 D6R8Y8 96 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 RBM3P98179 157 aaKnown RBP2.53□□□□□ -2
SF3B1-212ENST00000496458 RHOHQ15669 191 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 Q1T7F1 81 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 LYPD5Q6UWN5 251 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 MXRA5Q9NR99 2828 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 ARFGEF3Q5TH69 2177 aa2.53□□□□□ -2
SF3B1-212ENST00000496458 COL6A5A8TX70 2615 aa2.52□□□□□ -2.01
SF3B1-212ENST00000496458 CSMD2Q7Z408 3487 aa2.52□□□□□ -2.01
SF3B1-212ENST00000496458 A0A0J9YX75 114 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms