RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PET117Q6UWS5 81 aa9.2□□□□□ -0.94
USP39-217ENST00000491659 H0Y9J4 135 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 KRTAP10-8P60410 259 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 ODF1Q14990 250 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 VAMP8Q9BV40 100 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 TP73-AS1Q9UF72 201 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 TNXBP22105 4242 aa9.19□□□□□ -0.94
USP39-217ENST00000491659 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
USP39-217ENST00000491659 MRPL55Q7Z7F7 128 aaKnown RBP9.18□□□□□ -0.94
USP39-217ENST00000491659 C11orf86A6NJI1 115 aa9.17□□□□□ -0.94
USP39-217ENST00000491659 SYS1-DBNDD2H3BUS1 97 aa9.17□□□□□ -0.94
USP39-217ENST00000491659 CHTOPQ9Y3Y2 248 aaKnown RBP9.17□□□□□ -0.94
USP39-217ENST00000491659 SFTA2Q6UW10 78 aa9.16□□□□□ -0.94
USP39-217ENST00000491659 IFI27L1Q96BM0 104 aa9.16□□□□□ -0.94
USP39-217ENST00000491659 PRO1933Q9H354 126 aa9.16□□□□□ -0.94
USP39-217ENST00000491659 PFN2P35080 140 aa9.15□□□□□ -0.94
USP39-217ENST00000491659 NKAPP1Q8N9T2 125 aa9.15□□□□□ -0.94
USP39-217ENST00000491659 HMCN2Q8NDA2 5059 aa9.15□□□□□ -0.95
USP39-217ENST00000491659 TRAV12-1A0A0B4J245 112 aa9.14□□□□□ -0.95
USP39-217ENST00000491659 HSBP1L1C9JCN9 74 aa9.14□□□□□ -0.95
USP39-217ENST00000491659 ERG28Q9UKR5 140 aa9.14□□□□□ -0.95
USP39-217ENST00000491659 IGLV5-37A0A075B6J1 123 aa9.13□□□□□ -0.95
USP39-217ENST00000491659 ZNF861PO60384 105 aa9.12□□□□□ -0.95
USP39-217ENST00000491659 DDTP30046 118 aa9.12□□□□□ -0.95
USP39-217ENST00000491659 COX17Q14061 63 aa9.12□□□□□ -0.95
USP39-217ENST00000491659 LINC00167Q96N53 147 aa9.12□□□□□ -0.95
USP39-217ENST00000491659 PAM16Q9Y3D7 125 aa9.12□□□□□ -0.95
USP39-217ENST00000491659 GAGE10A6NGK3 116 aa9.11□□□□□ -0.95
USP39-217ENST00000491659 H0Y8G0 127 aa9.11□□□□□ -0.95
USP39-217ENST00000491659 SPATA45Q537H7 98 aa9.11□□□□□ -0.95
USP39-217ENST00000491659 LINC01545Q5VT33 79 aa9.11□□□□□ -0.95
USP39-217ENST00000491659 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
USP39-217ENST00000491659 ZNF625Q96I27 306 aaPredicted RBP9.11□□□□□ -0.95
USP39-217ENST00000491659 IGLV1-50A0A075B6I6 118 aa9.1□□□□□ -0.95
USP39-217ENST00000491659 TMEM223A0PJW6 202 aa9.1□□□□□ -0.95
USP39-217ENST00000491659 RPL37AP8A6NKH3 93 aa9.1□□□□□ -0.95
USP39-217ENST00000491659 LINC00587B1AMM8 73 aa9.1□□□□□ -0.95
USP39-217ENST00000491659 BCE1O60756 84 aa9.1□□□□□ -0.95
USP39-217ENST00000491659 RPL28P46779 137 aaKnown RBP9.09□□□□□ -0.95
USP39-217ENST00000491659 MIEN1Q9BRT3 115 aa9.09□□□□□ -0.95
USP39-217ENST00000491659 SND1-IT1Q9HBX3 110 aa9.09□□□□□ -0.95
USP39-217ENST00000491659 KRTAP1-4P0C5Y4 121 aa9.08□□□□□ -0.96
USP39-217ENST00000491659 RPL24P83731 157 aaKnown RBP9.08□□□□□ -0.96
USP39-217ENST00000491659 ATOH7Q8N100 152 aa9.08□□□□□ -0.96
USP39-217ENST00000491659 UQCR10Q9UDW1 63 aa9.08□□□□□ -0.96
USP39-217ENST00000491659 RPL13AP40429 203 aaKnown RBP9.07□□□□□ -0.96
USP39-217ENST00000491659 VPREB1P12018 145 aa9.06□□□□□ -0.96
USP39-217ENST00000491659 LINC00158P58513 81 aa9.06□□□□□ -0.96
USP39-217ENST00000491659 IGKV2-28A0A075B6P5 120 aa9.05□□□□□ -0.96
USP39-217ENST00000491659 IGKV2D-28P01615 120 aa9.05□□□□□ -0.96
USP39-217ENST00000491659 UBE2AP49459 152 aa9.05□□□□□ -0.96
USP39-217ENST00000491659 MEIG1Q5JSS6 88 aa9.04□□□□□ -0.96
USP39-217ENST00000491659 A0A0U1RRA0 63 aa9.03□□□□□ -0.96
USP39-217ENST00000491659 PMCHL2Q9BQD1 86 aa9.03□□□□□ -0.96
USP39-217ENST00000491659 DPM2O94777 84 aa9.02□□□□□ -0.97
USP39-217ENST00000491659 PLNP26678 52 aa9.02□□□□□ -0.97
USP39-217ENST00000491659 HERV-K104P63124 156 aa9.02□□□□□ -0.97
USP39-217ENST00000491659 IGKCP01834 107 aa9.01□□□□□ -0.97
USP39-217ENST00000491659 SMIM13P0DJ93 91 aa9.01□□□□□ -0.97
USP39-217ENST00000491659 NDUFA12Q9UI09 145 aa9.01□□□□□ -0.97
USP39-217ENST00000491659 M0R143 59 aa9□□□□□ -0.97
USP39-217ENST00000491659 SLC25A34Q6PIV7 304 aa9□□□□□ -0.97
USP39-217ENST00000491659 C14orf144Q96I85 54 aa9□□□□□ -0.97
USP39-217ENST00000491659 TMEM126AQ9H061 195 aa9□□□□□ -0.97
USP39-217ENST00000491659 MYMXA0A1B0GTQ4 84 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 HERVK_113P61574 105 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 FAM19A1Q7Z5A9 133 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 KRTAP13-1Q8IUC0 172 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 Q8NDZ9 215 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 PLEKHB2Q96CS7 222 aa8.99□□□□□ -0.97
USP39-217ENST00000491659 TMEM238C9JI98 176 aa8.98□□□□□ -0.97
USP39-217ENST00000491659 LEPROTO15243 131 aa8.98□□□□□ -0.97
USP39-217ENST00000491659 PRLHP81277 87 aa8.98□□□□□ -0.97
USP39-217ENST00000491659 MIR7-3HGQ8N6C7 128 aa8.98□□□□□ -0.97
USP39-217ENST00000491659 COX8AP10176 69 aa8.97□□□□□ -0.97
USP39-217ENST00000491659 CRYGAP11844 174 aa8.97□□□□□ -0.97
USP39-217ENST00000491659 M0R378 163 aa8.96□□□□□ -0.98
USP39-217ENST00000491659 TSPEAR-AS2P59090 65 aa8.96□□□□□ -0.98
USP39-217ENST00000491659 BOD1L2Q8IYS8 172 aa8.96□□□□□ -0.98
USP39-217ENST00000491659 A0A087X002 238 aa8.95□□□□□ -0.98
USP39-217ENST00000491659 J3QQQ9 107 aa8.95□□□□□ -0.98
USP39-217ENST00000491659 CTAG1AP78358 180 aa8.95□□□□□ -0.98
USP39-217ENST00000491659 DLEU1O43261 78 aa8.94□□□□□ -0.98
USP39-217ENST00000491659 LGALS3P17931 250 aaKnown RBP8.94□□□□□ -0.98
USP39-217ENST00000491659 NMUP48645 174 aa8.94□□□□□ -0.98
USP39-217ENST00000491659 ANKRD39Q53RE8 183 aa8.94□□□□□ -0.98
USP39-217ENST00000491659 NCR3O14931 201 aa8.93□□□□□ -0.98
USP39-217ENST00000491659 TYMSOSQ8TAI1 123 aa8.93□□□□□ -0.98
USP39-217ENST00000491659 UBR4Q5T4S7 5183 aa8.93□□□□□ -0.98
USP39-217ENST00000491659 IGKV2D-26A0A0A0MRZ7 120 aa8.92□□□□□ -0.98
USP39-217ENST00000491659 PRYO14603 147 aa8.92□□□□□ -0.98
USP39-217ENST00000491659 FAM229BQ4G0N7 80 aa8.92□□□□□ -0.98
USP39-217ENST00000491659 HIGD2AQ9BW72 106 aa8.91□□□□□ -0.98
USP39-217ENST00000491659 SNHG12Q9BXW3 62 aa8.91□□□□□ -0.98
USP39-217ENST00000491659 ANAPC11Q9NYG5 84 aa8.91□□□□□ -0.98
USP39-217ENST00000491659 DAND5Q8N907 189 aa8.9□□□□□ -0.98
USP39-217ENST00000491659 BATFQ16520 125 aa8.89□□□□□ -0.99
USP39-217ENST00000491659 LRP2P98164 4655 aa8.89□□□□□ -0.99
USP39-217ENST00000491659 COL5A1-AS1Q5SY13 56 aa8.88□□□□□ -0.99
USP39-217ENST00000491659 LOC107984156A0A0G2JMH3 177 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms