RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 TLN2Q9Y4G6 2542 aa12.09□□□□□ -0.47
NPHP4-209ENST00000489180 Q6ZQT0 140 aa12.09□□□□□ -0.47
NPHP4-209ENST00000489180 ELOF1P60002 83 aaKnown RBP12.09□□□□□ -0.47
NPHP4-209ENST00000489180 FN1P02751 2386 aaKnown RBP12.08□□□□□ -0.48
NPHP4-209ENST00000489180 USP9XQ93008 2570 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-209ENST00000489180 MOBPQ13875 183 aa12.06□□□□□ -0.48
NPHP4-209ENST00000489180 PRO0628Q9UI54 55 aa12.04□□□□□ -0.48
NPHP4-209ENST00000489180 ST20-AS1Q8NBB2 130 aa12.04□□□□□ -0.48
NPHP4-209ENST00000489180 COL27A1Q8IZC6 1860 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-209ENST00000489180 C7orf65Q6ZTY9 151 aa12.03□□□□□ -0.48
NPHP4-209ENST00000489180 ZFYVE26Q68DK2 2539 aa12.03□□□□□ -0.48
NPHP4-209ENST00000489180 TM2D3Q9BRN9 247 aa12.03□□□□□ -0.48
NPHP4-209ENST00000489180 SETD2Q9BYW2 2564 aaPredicted RBP12.02□□□□□ -0.48
NPHP4-209ENST00000489180 MDFIQ99750 246 aa12.02□□□□□ -0.48
NPHP4-209ENST00000489180 LIMD2Q9BT23 127 aa12.02□□□□□ -0.49
NPHP4-209ENST00000489180 PHF5AQ7RTV0 110 aaKnown RBP12.02□□□□□ -0.49
NPHP4-209ENST00000489180 LITAFQ99732 161 aa12.02□□□□□ -0.49
NPHP4-209ENST00000489180 CEP295Q9C0D2 2601 aa12.01□□□□□ -0.49
NPHP4-209ENST00000489180 LINC00476Q8WZB0 136 aa12.01□□□□□ -0.49
NPHP4-209ENST00000489180 SPACA4Q8TDM5 124 aa12.01□□□□□ -0.49
NPHP4-209ENST00000489180 MUC4Q99102 2169 aa12.01□□□□□ -0.49
NPHP4-209ENST00000489180 RPL37AP61513 92 aaKnown RBP12□□□□□ -0.49
NPHP4-209ENST00000489180 SPAG11AQ6PDA7 123 aa12□□□□□ -0.49
NPHP4-209ENST00000489180 LOC110117498A0A087WWA1 95 aa12□□□□□ -0.49
NPHP4-209ENST00000489180 Q6ZRX8 168 aa11.99□□□□□ -0.49
NPHP4-209ENST00000489180 A0A1B0GU69 56 aa11.98□□□□□ -0.49
NPHP4-209ENST00000489180 ANKRD11Q6UB99 2663 aaPredicted RBP11.98□□□□□ -0.49
NPHP4-209ENST00000489180 FSHBP01225 129 aa11.98□□□□□ -0.49
NPHP4-209ENST00000489180 GOLGB1Q14789 3259 aaKnown RBP11.98□□□□□ -0.49
NPHP4-209ENST00000489180 LRRK2Q5S007 2527 aa11.97□□□□□ -0.49
NPHP4-209ENST00000489180 Q8NBF4 154 aa11.96□□□□□ -0.49
NPHP4-209ENST00000489180 CHTF8P0CG12 524 aa11.96□□□□□ -0.49
NPHP4-209ENST00000489180 COL4A2P08572 1712 aa11.96□□□□□ -0.5
NPHP4-209ENST00000489180 BCE1O60756 84 aa11.95□□□□□ -0.5
NPHP4-209ENST00000489180 TP53AIP1Q9HCN2 124 aa11.94□□□□□ -0.5
NPHP4-209ENST00000489180 EPM2AB3EWF7 344 aa11.94□□□□□ -0.5
NPHP4-209ENST00000489180 USP9YO00507 2555 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-209ENST00000489180 RPS28P62857 69 aaKnown RBP11.92□□□□□ -0.5
NPHP4-209ENST00000489180 ACYP2P14621 99 aa11.92□□□□□ -0.5
NPHP4-209ENST00000489180 Q6ZRP5 223 aa11.91□□□□□ -0.5
NPHP4-209ENST00000489180 FAM168BA1KXE4 195 aa11.9□□□□□ -0.5
NPHP4-209ENST00000489180 Q8NAQ8 132 aa11.9□□□□□ -0.51
NPHP4-209ENST00000489180 H3BNG1 76 aa11.89□□□□□ -0.51
NPHP4-209ENST00000489180 EIF4EBP3O60516 100 aaPredicted RBP11.89□□□□□ -0.51
NPHP4-209ENST00000489180 NHLRC4P0CG21 123 aaPredicted RBP11.88□□□□□ -0.51
NPHP4-209ENST00000489180 LINC00588Q9Y4M8 146 aa11.88□□□□□ -0.51
NPHP4-209ENST00000489180 A0A1B0GW54 56 aa11.86□□□□□ -0.51
NPHP4-209ENST00000489180 IGLV8-61A0A075B6I0 122 aa11.86□□□□□ -0.51
NPHP4-209ENST00000489180 TRAV22A0A0B4J277 110 aa11.86□□□□□ -0.51
NPHP4-209ENST00000489180 PKD1L2Q7Z442 2459 aa11.86□□□□□ -0.51
NPHP4-209ENST00000489180 IGLV6-57P01721 117 aa11.85□□□□□ -0.51
NPHP4-209ENST00000489180 C16orf90A8MZG2 172 aa11.84□□□□□ -0.51
NPHP4-209ENST00000489180 VPREB1P12018 145 aa11.84□□□□□ -0.51
NPHP4-209ENST00000489180 GVQW2A0A096LPI5 108 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-209ENST00000489180 TRBV7-4A0A0J9YYF1 115 aa11.83□□□□□ -0.52
NPHP4-209ENST00000489180 RTL8CO15255 209 aa11.83□□□□□ -0.52
NPHP4-209ENST00000489180 K7EQZ3 153 aa11.83□□□□□ -0.52
NPHP4-209ENST00000489180 LINC00313P59037 77 aa11.82□□□□□ -0.52
NPHP4-209ENST00000489180 SERTAD4-AS1Q5TG53 156 aa11.82□□□□□ -0.52
NPHP4-209ENST00000489180 KRTAP24-1Q3LI83 254 aa11.8□□□□□ -0.52
NPHP4-209ENST00000489180 H3BPC8 53 aa11.8□□□□□ -0.52
NPHP4-209ENST00000489180 PCSK5Q92824 1860 aa11.8□□□□□ -0.52
NPHP4-209ENST00000489180 KLK9Q2XQG4 91 aa11.8□□□□□ -0.52
NPHP4-209ENST00000489180 CHD8Q9HCK8 2581 aa11.79□□□□□ -0.52
NPHP4-209ENST00000489180 ATP11AUNQ6ZP68 121 aa11.79□□□□□ -0.52
NPHP4-209ENST00000489180 NBDYA0A0U1RRE5 68 aa11.78□□□□□ -0.52
NPHP4-209ENST00000489180 SPTBN4Q9H254 2564 aa11.77□□□□□ -0.52
NPHP4-209ENST00000489180 ZNF462Q96JM2 2506 aa11.75□□□□□ -0.53
NPHP4-209ENST00000489180 MTORP42345 2549 aa11.73□□□□□ -0.53
NPHP4-209ENST00000489180 A8MWP4 228 aa11.73□□□□□ -0.53
NPHP4-209ENST00000489180 CSNK1G2-AS1Q8NCQ2 148 aa11.73□□□□□ -0.53
NPHP4-209ENST00000489180 TYMSOSQ8TAI1 123 aa11.73□□□□□ -0.53
NPHP4-209ENST00000489180 A8MUN3 132 aa11.73□□□□□ -0.53
NPHP4-209ENST00000489180 IGLV1-50A0A075B6I6 118 aa11.72□□□□□ -0.53
NPHP4-209ENST00000489180 Q96NJ1 140 aa11.72□□□□□ -0.53
NPHP4-209ENST00000489180 POLQO75417 2590 aa11.7□□□□□ -0.54
NPHP4-209ENST00000489180 A0A0G2JQZ4 141 aa11.7□□□□□ -0.54
NPHP4-209ENST00000489180 A0A1W2PNN7 141 aa11.7□□□□□ -0.54
NPHP4-209ENST00000489180 DNAH10OSP0CZ25 163 aa11.7□□□□□ -0.54
NPHP4-209ENST00000489180 COA5Q86WW8 74 aa11.7□□□□□ -0.54
NPHP4-209ENST00000489180 LINC00528Q8N1L1 170 aa11.69□□□□□ -0.54
NPHP4-209ENST00000489180 KCNQ1DNQ9H478 68 aa11.68□□□□□ -0.54
NPHP4-209ENST00000489180 IGFL1Q6UW32 110 aa11.67□□□□□ -0.54
NPHP4-209ENST00000489180 MRPL34Q9BQ48 92 aaKnown RBP11.66□□□□□ -0.54
NPHP4-209ENST00000489180 LOC101927531A0A1B0GV80 90 aa11.65□□□□□ -0.54
NPHP4-209ENST00000489180 C8orf87E5RJ46 101 aa11.65□□□□□ -0.54
NPHP4-209ENST00000489180 ERC2-IT1O76042 136 aa11.64□□□□□ -0.55
NPHP4-209ENST00000489180 ANKRD17O75179 2603 aaKnown RBP11.64□□□□□ -0.55
NPHP4-209ENST00000489180 C15orf56Q8N910 161 aa11.64□□□□□ -0.55
NPHP4-209ENST00000489180 C9orf129Q5T035 196 aaKnown RBP11.63□□□□□ -0.55
NPHP4-209ENST00000489180 Q8N377 158 aa11.61□□□□□ -0.55
NPHP4-209ENST00000489180 GIG44P09565 113 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-209ENST00000489180 DSCR10P59022 87 aa11.6□□□□□ -0.55
NPHP4-209ENST00000489180 LINC01600Q96MT4 127 aa11.6□□□□□ -0.55
NPHP4-209ENST00000489180 KRTAP10-11P60412 298 aa11.59□□□□□ -0.55
NPHP4-209ENST00000489180 PRR34Q9NV39 138 aa11.58□□□□□ -0.56
NPHP4-209ENST00000489180 FAM229AH3BQW9 127 aa11.58□□□□□ -0.56
NPHP4-209ENST00000489180 ACANP16112 2415 aa11.57□□□□□ -0.56
NPHP4-209ENST00000489180 KLKP1Q107X0 134 aa11.56□□□□□ -0.56
NPHP4-209ENST00000489180 PRR15Q8IV56 129 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 147.1 ms