RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ANKRD29Q8N6D5 301 aa12.86□□□□□ -0.35
CCM2-216ENST00000488727 CARD19Q96LW7 228 aa12.85□□□□□ -0.35
CCM2-216ENST00000488727 CD164L2Q6UWJ8 174 aa12.85□□□□□ -0.35
CCM2-216ENST00000488727 DNAH17Q9UFH2 4485 aa12.85□□□□□ -0.35
CCM2-216ENST00000488727 FAT2Q9NYQ8 4349 aa12.83□□□□□ -0.36
CCM2-216ENST00000488727 IGKV2D-24A0A075B6R9 120 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 TRAV13-2A0A0B4J235 113 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 H3BT86 120 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 COX7A2LO14548 114 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 LINC00158P58513 81 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 GAGE12HA6NDE8 117 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 TNP2Q05952 138 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 C6orf226Q5I0X4 101 aa12.82□□□□□ -0.36
CCM2-216ENST00000488727 IGLV10-54A0A075B6I4 117 aa12.81□□□□□ -0.36
CCM2-216ENST00000488727 CHCHD10Q8WYQ3 142 aaPredicted RBP12.81□□□□□ -0.36
CCM2-216ENST00000488727 CLEC2BQ92478 149 aa12.81□□□□□ -0.36
CCM2-216ENST00000488727 SND1-IT1Q9HBX3 110 aa12.81□□□□□ -0.36
CCM2-216ENST00000488727 C1orf43Q9BWL3 253 aa12.8□□□□□ -0.36
CCM2-216ENST00000488727 CXCL5P42830 114 aa12.79□□□□□ -0.36
CCM2-216ENST00000488727 KRTAP26-1Q6PEX3 210 aa12.79□□□□□ -0.36
CCM2-216ENST00000488727 LINC00336Q6ZUF6 198 aa12.79□□□□□ -0.36
CCM2-216ENST00000488727 RMI2Q96E14 147 aa12.79□□□□□ -0.36
CCM2-216ENST00000488727 PSCAO43653 123 aa12.79□□□□□ -0.36
CCM2-216ENST00000488727 IGKV2-28A0A075B6P5 120 aa12.78□□□□□ -0.36
CCM2-216ENST00000488727 IGKV2D-28P01615 120 aa12.78□□□□□ -0.36
CCM2-216ENST00000488727 KIAA0087Q14695 138 aa12.78□□□□□ -0.36
CCM2-216ENST00000488727 TRAV8-4A0A0B4J246 113 aa12.77□□□□□ -0.36
CCM2-216ENST00000488727 RPL28P46779 137 aaKnown RBP12.76□□□□□ -0.37
CCM2-216ENST00000488727 PFN2P35080 140 aa12.76□□□□□ -0.37
CCM2-216ENST00000488727 C2orf82Q6UX34 121 aa12.76□□□□□ -0.37
CCM2-216ENST00000488727 LINC00337Q8N6G1 96 aa12.76□□□□□ -0.37
CCM2-216ENST00000488727 SIGMAR1Q99720 223 aa12.76□□□□□ -0.37
CCM2-216ENST00000488727 NTN5Q8WTR8 489 aaPredicted RBP12.75□□□□□ -0.37
CCM2-216ENST00000488727 LRCOL1A6NCL2 159 aa12.74□□□□□ -0.37
CCM2-216ENST00000488727 CKS1BP61024 79 aa12.74□□□□□ -0.37
CCM2-216ENST00000488727 CFAP161Q6P656 301 aa12.74□□□□□ -0.37
CCM2-216ENST00000488727 TRACP01848 142 aa12.74□□□□□ -0.37
CCM2-216ENST00000488727 COX17Q14061 63 aa12.74□□□□□ -0.37
CCM2-216ENST00000488727 A0A087WTM6 91 aa12.73□□□□□ -0.37
CCM2-216ENST00000488727 CDIP1Q9H305 208 aa12.73□□□□□ -0.37
CCM2-216ENST00000488727 A0A1B0GVY2 172 aa12.72□□□□□ -0.37
CCM2-216ENST00000488727 MALP21145 153 aa12.72□□□□□ -0.37
CCM2-216ENST00000488727 LECT2O14960 151 aa12.71□□□□□ -0.37
CCM2-216ENST00000488727 PKD1P98161 4303 aa12.71□□□□□ -0.38
CCM2-216ENST00000488727 SCGB1A1P11684 91 aa12.69□□□□□ -0.38
CCM2-216ENST00000488727 C21orf62-AS1Q17RA5 79 aa12.69□□□□□ -0.38
CCM2-216ENST00000488727 DNAH11Q96DT5 4516 aa12.68□□□□□ -0.38
CCM2-216ENST00000488727 TEX49A0A1B0GTD5 131 aa12.67□□□□□ -0.38
CCM2-216ENST00000488727 NDUFC2O95298 119 aa12.67□□□□□ -0.38
CCM2-216ENST00000488727 SMIM11BQ8TCY0 68 aa12.67□□□□□ -0.38
CCM2-216ENST00000488727 HECTD4Q9Y4D8 3996 aa12.66□□□□□ -0.38
CCM2-216ENST00000488727 USP17L23D6RBM5 183 aa12.66□□□□□ -0.38
CCM2-216ENST00000488727 SPAG11BQ08648 103 aa12.65□□□□□ -0.38
CCM2-216ENST00000488727 FAM218AQ96MZ4 157 aa12.65□□□□□ -0.38
CCM2-216ENST00000488727 EPPK1P58107 5090 aaKnown RBP12.65□□□□□ -0.38
CCM2-216ENST00000488727 H0YGX0 51 aa12.65□□□□□ -0.38
CCM2-216ENST00000488727 KRTAP10-2P60368 255 aa12.65□□□□□ -0.38
CCM2-216ENST00000488727 Q8N814 137 aa12.65□□□□□ -0.38
CCM2-216ENST00000488727 FUSP35637 526 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCM2-216ENST00000488727 C15orf56Q8N910 161 aa12.62□□□□□ -0.39
CCM2-216ENST00000488727 PKHD1P08F94 4074 aa12.61□□□□□ -0.39
CCM2-216ENST00000488727 GVQW2A0A096LPI5 108 aaPredicted RBP12.61□□□□□ -0.39
CCM2-216ENST00000488727 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.59□□□□□ -0.39
CCM2-216ENST00000488727 OR13C6PQ8NH95 151 aa12.59□□□□□ -0.39
CCM2-216ENST00000488727 FAM240AA0A1B0GVK7 77 aa12.59□□□□□ -0.39
CCM2-216ENST00000488727 XGP55808 180 aa12.59□□□□□ -0.39
CCM2-216ENST00000488727 BAALC-AS2P0C853 105 aa12.58□□□□□ -0.4
CCM2-216ENST00000488727 C14orf177Q52M58 125 aa12.58□□□□□ -0.4
CCM2-216ENST00000488727 C9orf116Q5BN46 136 aaPredicted RBP12.58□□□□□ -0.4
CCM2-216ENST00000488727 UNQ6190/PRO20217Q6UXQ8 127 aa12.58□□□□□ -0.4
CCM2-216ENST00000488727 HIGD2BQ4VC39 106 aa12.57□□□□□ -0.4
CCM2-216ENST00000488727 C10orf25Q5T742 122 aa12.57□□□□□ -0.4
CCM2-216ENST00000488727 A0A087WYN8 130 aa12.56□□□□□ -0.4
CCM2-216ENST00000488727 MT-ATP8P03928 68 aa12.56□□□□□ -0.4
CCM2-216ENST00000488727 C22orf24Q9Y442 160 aa12.56□□□□□ -0.4
CCM2-216ENST00000488727 TMEM126AQ9H061 195 aa12.55□□□□□ -0.4
CCM2-216ENST00000488727 DNAH5Q8TE73 4624 aa12.55□□□□□ -0.4
CCM2-216ENST00000488727 DNAL4O96015 105 aa12.54□□□□□ -0.4
CCM2-216ENST00000488727 IGLV5-52A0A0A0MRZ9 124 aa12.54□□□□□ -0.4
CCM2-216ENST00000488727 SLPIP03973 132 aa12.54□□□□□ -0.4
CCM2-216ENST00000488727 LINC00526Q96FQ7 95 aa12.54□□□□□ -0.4
CCM2-216ENST00000488727 A0A1B0GX51 115 aa12.53□□□□□ -0.4
CCM2-216ENST00000488727 C6orf48Q9UBA6 75 aa12.51□□□□□ -0.41
CCM2-216ENST00000488727 PRR3P79522 188 aaKnown RBP12.51□□□□□ -0.41
CCM2-216ENST00000488727 Q8NDZ9 215 aa12.51□□□□□ -0.41
CCM2-216ENST00000488727 C16orf90A8MZG2 172 aa12.5□□□□□ -0.41
CCM2-216ENST00000488727 LINC00167Q96N53 147 aa12.5□□□□□ -0.41
CCM2-216ENST00000488727 ACYP1P07311 99 aa12.49□□□□□ -0.41
CCM2-216ENST00000488727 CNBPP62633 177 aaKnown RBP12.49□□□□□ -0.41
CCM2-216ENST00000488727 DYNC1H1Q14204 4646 aaKnown RBP12.49□□□□□ -0.41
CCM2-216ENST00000488727 ZNF561-AS1K7EIQ3 104 aa12.48□□□□□ -0.41
CCM2-216ENST00000488727 INAFM2P0DMQ5 153 aa12.48□□□□□ -0.41
CCM2-216ENST00000488727 NCR3O14931 201 aa12.48□□□□□ -0.41
CCM2-216ENST00000488727 C2orf48Q96LS8 159 aa12.48□□□□□ -0.41
CCM2-216ENST00000488727 F8WDY8 70 aa12.47□□□□□ -0.41
CCM2-216ENST00000488727 SNCGO76070 127 aa12.45□□□□□ -0.42
CCM2-216ENST00000488727 KRTAP10-1P60331 282 aa12.45□□□□□ -0.42
CCM2-216ENST00000488727 S100A7L2Q5SY68 101 aa12.45□□□□□ -0.42
CCM2-216ENST00000488727 C9orf163Q8N9P6 203 aa12.45□□□□□ -0.42
CCM2-216ENST00000488727 OBSCN-AS1Q96MR7 158 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms