RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 IGKV2D-26A0A0A0MRZ7 120 aa12.28□□□□□ -0.44
LIME1-205ENST00000480139 PRR3P79522 188 aaKnown RBP12.27□□□□□ -0.45
LIME1-205ENST00000480139 C22orf24Q9Y442 160 aa12.27□□□□□ -0.45
LIME1-205ENST00000480139 A0A0U1RRA0 63 aa12.26□□□□□ -0.45
LIME1-205ENST00000480139 MIR7-3HGQ8N6C7 128 aa12.26□□□□□ -0.45
LIME1-205ENST00000480139 A0A0J9YXY3 114 aa12.25□□□□□ -0.45
LIME1-205ENST00000480139 LBHQ53QV2 105 aaPredicted RBP12.25□□□□□ -0.45
LIME1-205ENST00000480139 ANKRD39Q53RE8 183 aa12.25□□□□□ -0.45
LIME1-205ENST00000480139 RPL24P83731 157 aaKnown RBP12.24□□□□□ -0.45
LIME1-205ENST00000480139 MRPL55Q7Z7F7 128 aaKnown RBP12.24□□□□□ -0.45
LIME1-205ENST00000480139 ZNF815PA8K554 130 aa12.23□□□□□ -0.45
LIME1-205ENST00000480139 INAFM2P0DMQ5 153 aa12.23□□□□□ -0.45
LIME1-205ENST00000480139 VPREB1P12018 145 aa12.23□□□□□ -0.45
LIME1-205ENST00000480139 LOC107984156A0A0G2JMH3 177 aa12.22□□□□□ -0.45
LIME1-205ENST00000480139 SCGB1D1O95968 90 aa12.22□□□□□ -0.45
LIME1-205ENST00000480139 ARL17AQ8IVW1 177 aa12.22□□□□□ -0.45
LIME1-205ENST00000480139 NKAPP1Q8N9T2 125 aa12.22□□□□□ -0.45
LIME1-205ENST00000480139 PSORS1C2Q9UIG4 136 aa12.22□□□□□ -0.45
LIME1-205ENST00000480139 PCLOQ9Y6V0 5065 aa12.21□□□□□ -0.45
LIME1-205ENST00000480139 TIMM17BO60830 172 aa12.21□□□□□ -0.45
LIME1-205ENST00000480139 UBE2BP63146 152 aa12.21□□□□□ -0.45
LIME1-205ENST00000480139 TTTY13Q9BZ97 58 aa12.21□□□□□ -0.45
LIME1-205ENST00000480139 TMA7Q9Y2S6 64 aaKnown RBP12.21□□□□□ -0.45
LIME1-205ENST00000480139 HSBP1L1C9JCN9 74 aa12.2□□□□□ -0.46
LIME1-205ENST00000480139 KRTAP11-1Q8IUC1 163 aa12.2□□□□□ -0.46
LIME1-205ENST00000480139 Q8NDZ9 215 aa12.19□□□□□ -0.46
LIME1-205ENST00000480139 DAND5Q8N907 189 aa12.18□□□□□ -0.46
LIME1-205ENST00000480139 LINC00167Q96N53 147 aa12.18□□□□□ -0.46
LIME1-205ENST00000480139 LITAFQ99732 161 aa12.18□□□□□ -0.46
LIME1-205ENST00000480139 ADAMTSL4-AS1Q5T5F5 129 aa12.17□□□□□ -0.46
LIME1-205ENST00000480139 BOD1L2Q8IYS8 172 aa12.17□□□□□ -0.46
LIME1-205ENST00000480139 HNRNPA3P51991 378 aaKnown RBP12.16□□□□□ -0.46
LIME1-205ENST00000480139 JOSD1Q15040 202 aaPredicted RBP12.15□□□□□ -0.46
LIME1-205ENST00000480139 C1orf137Q5JT78 98 aa12.15□□□□□ -0.46
LIME1-205ENST00000480139 PCP2Q8IVA1 136 aa12.15□□□□□ -0.46
LIME1-205ENST00000480139 MIEN1Q9BRT3 115 aa12.15□□□□□ -0.46
LIME1-205ENST00000480139 SCGB1D4Q6XE38 83 aa12.14□□□□□ -0.47
LIME1-205ENST00000480139 GAGE10A6NGK3 116 aa12.13□□□□□ -0.47
LIME1-205ENST00000480139 M0R378 163 aa12.13□□□□□ -0.47
LIME1-205ENST00000480139 IGLV1-50A0A075B6I6 118 aa12.12□□□□□ -0.47
LIME1-205ENST00000480139 RPL37AP8A6NKH3 93 aa12.12□□□□□ -0.47
LIME1-205ENST00000480139 NDUFC2O95298 119 aa12.12□□□□□ -0.47
LIME1-205ENST00000480139 TMEM238C9JI98 176 aa12.11□□□□□ -0.47
LIME1-205ENST00000480139 IGLV7-43P04211 117 aa12.11□□□□□ -0.47
LIME1-205ENST00000480139 SRSF9Q13242 221 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIME1-205ENST00000480139 SPINK6Q6UWN8 80 aa12.1□□□□□ -0.47
LIME1-205ENST00000480139 SOSTDC1Q6X4U4 206 aa12.1□□□□□ -0.47
LIME1-205ENST00000480139 LINC00308Q8TCZ7 52 aa12.1□□□□□ -0.47
LIME1-205ENST00000480139 SPANXDQ9BXN6 97 aa12.1□□□□□ -0.47
LIME1-205ENST00000480139 SPANXCQ9NY87 97 aa12.1□□□□□ -0.47
LIME1-205ENST00000480139 IGKV2-28A0A075B6P5 120 aa12.09□□□□□ -0.47
LIME1-205ENST00000480139 TRBV10-2A0A0K0K1G8 114 aa12.09□□□□□ -0.47
LIME1-205ENST00000480139 IGKV2D-28P01615 120 aa12.09□□□□□ -0.47
LIME1-205ENST00000480139 PKHD1L1Q86WI1 4243 aa12.09□□□□□ -0.47
LIME1-205ENST00000480139 FLG2Q5D862 2391 aaPredicted RBP12.08□□□□□ -0.47
LIME1-205ENST00000480139 Q6ZVH6 145 aa12.08□□□□□ -0.48
LIME1-205ENST00000480139 PPDPFQ9H3Y8 114 aa12.08□□□□□ -0.48
LIME1-205ENST00000480139 SPANXB1Q9NS25 103 aaPredicted RBP12.08□□□□□ -0.48
LIME1-205ENST00000480139 NCR3O14931 201 aa12.07□□□□□ -0.48
LIME1-205ENST00000480139 EIF4EBP3O60516 100 aaPredicted RBP12.07□□□□□ -0.48
LIME1-205ENST00000480139 BCE1O60756 84 aa12.07□□□□□ -0.48
LIME1-205ENST00000480139 NPC2P61916 151 aa12.07□□□□□ -0.48
LIME1-205ENST00000480139 COPS9Q8WXC6 57 aa12.06□□□□□ -0.48
LIME1-205ENST00000480139 COX8AP10176 69 aa12.05□□□□□ -0.48
LIME1-205ENST00000480139 PYY3Q5JQD4 70 aa12.05□□□□□ -0.48
LIME1-205ENST00000480139 VAMP8Q9BV40 100 aa12.05□□□□□ -0.48
LIME1-205ENST00000480139 MYCBP2O75592 4640 aa12.05□□□□□ -0.48
LIME1-205ENST00000480139 IFITM1P13164 125 aa12.04□□□□□ -0.48
LIME1-205ENST00000480139 REG3GQ6UW15 175 aa12.04□□□□□ -0.48
LIME1-205ENST00000480139 DLEU1O43261 78 aa12.03□□□□□ -0.48
LIME1-205ENST00000480139 SPATA45Q537H7 98 aa12.03□□□□□ -0.48
LIME1-205ENST00000480139 TMEM126AQ9H061 195 aa12.03□□□□□ -0.48
LIME1-205ENST00000480139 PRYO14603 147 aa12.02□□□□□ -0.49
LIME1-205ENST00000480139 ZNF861PO60384 105 aa12.02□□□□□ -0.49
LIME1-205ENST00000480139 DIRC1Q969H9 104 aa12.02□□□□□ -0.49
LIME1-205ENST00000480139 PAM16Q9Y3D7 125 aa12.02□□□□□ -0.49
LIME1-205ENST00000480139 TRBV10-3A0A0K0K1G6 114 aa12.01□□□□□ -0.49
LIME1-205ENST00000480139 KRTAP29-1A8MX34 341 aaPredicted RBP12.01□□□□□ -0.49
LIME1-205ENST00000480139 OXTP01178 125 aa12.01□□□□□ -0.49
LIME1-205ENST00000480139 KCNQ1DNQ9H478 68 aa12.01□□□□□ -0.49
LIME1-205ENST00000480139 DDTP30046 118 aa12□□□□□ -0.49
LIME1-205ENST00000480139 RPL28P46779 137 aaKnown RBP12□□□□□ -0.49
LIME1-205ENST00000480139 KRTAP13-1Q8IUC0 172 aa12□□□□□ -0.49
LIME1-205ENST00000480139 H0Y9J4 135 aa11.99□□□□□ -0.49
LIME1-205ENST00000480139 IGLV6-57P01721 117 aa11.99□□□□□ -0.49
LIME1-205ENST00000480139 S100A12P80511 92 aa11.99□□□□□ -0.49
LIME1-205ENST00000480139 SPRR1AP35321 89 aa11.98□□□□□ -0.49
LIME1-205ENST00000480139 LINC00518Q8N0U6 118 aa11.98□□□□□ -0.49
LIME1-205ENST00000480139 S100A7L2Q5SY68 101 aa11.97□□□□□ -0.49
LIME1-205ENST00000480139 MUSTN1Q8IVN3 82 aa11.97□□□□□ -0.49
LIME1-205ENST00000480139 UBE2AP49459 152 aa11.96□□□□□ -0.49
LIME1-205ENST00000480139 C14orf144Q96I85 54 aa11.96□□□□□ -0.49
LIME1-205ENST00000480139 LRP1Q07954 4544 aaKnown RBP11.95□□□□□ -0.5
LIME1-205ENST00000480139 FAM19A1Q7Z5A9 133 aa11.95□□□□□ -0.5
LIME1-205ENST00000480139 LINC00337Q8N6G1 96 aa11.95□□□□□ -0.5
LIME1-205ENST00000480139 CBY1Q9Y3M2 126 aa11.95□□□□□ -0.5
LIME1-205ENST00000480139 KRTAP4-16G5E9R7 235 aaPredicted RBP11.94□□□□□ -0.5
LIME1-205ENST00000480139 SLC25A34Q6PIV7 304 aa11.94□□□□□ -0.5
LIME1-205ENST00000480139 FAT3Q8TDW7 4589 aa11.94□□□□□ -0.5
LIME1-205ENST00000480139 HIGD1BQ9P298 99 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 377.2 ms