RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 C6orf48Q9UBA6 75 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 A0A096LNI7 61 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 F8WDY8 70 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 GAGE2BQ13066 116 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 MAJINQ3KP22 176 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 C9orf116Q5BN46 136 aaPredicted RBP4.25□□□□□ -1.73
SCN9A-206ENST00000472119 KRTAP5-5Q701N2 237 aaPredicted RBP4.25□□□□□ -1.73
SCN9A-206ENST00000472119 Q8IZM0 81 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 CIRBP-AS1Q8TBR5 109 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 COX7B2Q8TF08 81 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 MAP1LC3CQ9BXW4 147 aa4.25□□□□□ -1.73
SCN9A-206ENST00000472119 LOC107984640A0A0U1RRK4 108 aa4.24□□□□□ -1.73
SCN9A-206ENST00000472119 SYS1-DBNDD2H3BUS1 97 aa4.24□□□□□ -1.73
SCN9A-206ENST00000472119 RPL18AQ02543 176 aaKnown RBP4.24□□□□□ -1.73
SCN9A-206ENST00000472119 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
SCN9A-206ENST00000472119 TRBV30A0A0K0K1B3 111 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 TMEM223A0PJW6 202 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 DPM2O94777 84 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 C3orf79P0CE67 100 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 GAGE2EQ4V326 116 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 SPACA4Q8TDM5 124 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 GAGE2DQ9UEU5 116 aa4.23□□□□□ -1.73
SCN9A-206ENST00000472119 IGLV5-37A0A075B6J1 123 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 IGKCP01834 107 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 S100A6P06703 90 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 PLNP26678 52 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 CXCL5P42830 114 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 KRTDAPP60985 99 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 SNRPEP62304 92 aaKnown RBP4.22□□□□□ -1.73
SCN9A-206ENST00000472119 CIRBPQ14011 172 aaKnown RBP4.22□□□□□ -1.73
SCN9A-206ENST00000472119 Q6ZRP5 223 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 HIST3H2BBQ8N257 126 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 STPG4Q8N801 248 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 ZNF625Q96I27 306 aaPredicted RBP4.22□□□□□ -1.73
SCN9A-206ENST00000472119 PKIGQ9Y2B9 76 aa4.22□□□□□ -1.73
SCN9A-206ENST00000472119 TLX1NBP0CAT3 122 aa4.21□□□□□ -1.74
SCN9A-206ENST00000472119 S100A2P29034 98 aa4.21□□□□□ -1.74
SCN9A-206ENST00000472119 LINC01545Q5VT33 79 aa4.21□□□□□ -1.74
SCN9A-206ENST00000472119 PET117Q6UWS5 81 aa4.21□□□□□ -1.74
SCN9A-206ENST00000472119 LINC00474Q9P2X8 69 aa4.21□□□□□ -1.74
SCN9A-206ENST00000472119 FAT1Q14517 4588 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 A0A1W2PNN7 141 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 FAM168BA1KXE4 195 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 NDUFC2-KCTD14E9PQ53 114 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 PFN2P35080 140 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 Q5VSD8 79 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 HIST1H2BLQ99880 126 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 XAGE1AQ9HD64 81 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 PLAC8Q9NZF1 115 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 RYR1P21817 5038 aa4.2□□□□□ -1.74
SCN9A-206ENST00000472119 A0A0U1RRA0 63 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 C5orf52A6NGY3 159 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 EPM2AB3EWF7 344 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 LEPROTO15243 131 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 TSPEAR-AS2P59090 65 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 HERVK_113P61574 105 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 C9orf129Q5T035 196 aaKnown RBP4.19□□□□□ -1.74
SCN9A-206ENST00000472119 NDUFA12Q9UI09 145 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 HERC2O95714 4834 aa4.19□□□□□ -1.74
SCN9A-206ENST00000472119 C20orf202A1L168 122 aa4.18□□□□□ -1.74
SCN9A-206ENST00000472119 J3QQQ9 107 aa4.18□□□□□ -1.74
SCN9A-206ENST00000472119 FAM19A5Q7Z5A7 132 aaPredicted RBP4.18□□□□□ -1.74
SCN9A-206ENST00000472119 ATOH7Q8N100 152 aa4.18□□□□□ -1.74
SCN9A-206ENST00000472119 PLEKHB2Q96CS7 222 aa4.18□□□□□ -1.74
SCN9A-206ENST00000472119 ERG28Q9UKR5 140 aa4.18□□□□□ -1.74
SCN9A-206ENST00000472119 MYMXA0A1B0GTQ4 84 aa4.17□□□□□ -1.74
SCN9A-206ENST00000472119 E9PLD3 99 aa4.17□□□□□ -1.74
SCN9A-206ENST00000472119 SMIM13P0DJ93 91 aa4.17□□□□□ -1.74
SCN9A-206ENST00000472119 LGALS3P17931 250 aaKnown RBP4.17□□□□□ -1.74
SCN9A-206ENST00000472119 LINC00158P58513 81 aa4.17□□□□□ -1.74
SCN9A-206ENST00000472119 SFTA2Q6UW10 78 aa4.17□□□□□ -1.74
SCN9A-206ENST00000472119 PHF5AQ7RTV0 110 aaKnown RBP4.17□□□□□ -1.74
SCN9A-206ENST00000472119 IGKV2D-26A0A0A0MRZ7 120 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 RPL37AP61513 92 aaKnown RBP4.16□□□□□ -1.74
SCN9A-206ENST00000472119 COX17Q14061 63 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 MEIG1Q5JSS6 88 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 SERTAD4-AS1Q5TG53 156 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 C7orf33Q8WU49 177 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 SND1-IT1Q9HBX3 110 aa4.16□□□□□ -1.74
SCN9A-206ENST00000472119 SRRM2Q9UQ35 2752 aaKnown RBP4.16□□□□□ -1.74
SCN9A-206ENST00000472119 M0QXV9 152 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 NMUP48645 174 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 KRTAP10-4P60372 401 aaPredicted RBP4.15□□□□□ -1.75
SCN9A-206ENST00000472119 HERV-K104P63124 156 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 TTTY13Q9BZ97 58 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 C22orf24Q9Y442 160 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 VPS13BQ7Z7G8 4022 aa4.15□□□□□ -1.75
SCN9A-206ENST00000472119 A0A0J9YXY3 114 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 SCGB1D1O95968 90 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 INAFM2P0DMQ5 153 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 KRTAP11-1Q8IUC1 163 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 MIR7-3HGQ8N6C7 128 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 DAND5Q8N907 189 aa4.14□□□□□ -1.75
SCN9A-206ENST00000472119 GAGE10A6NGK3 116 aa4.13□□□□□ -1.75
SCN9A-206ENST00000472119 ZNF815PA8K554 130 aa4.13□□□□□ -1.75
SCN9A-206ENST00000472119 LINC00587B1AMM8 73 aa4.13□□□□□ -1.75
SCN9A-206ENST00000472119 AKR1D1P51857 326 aa4.13□□□□□ -1.75
SCN9A-206ENST00000472119 HNRNPA3P51991 378 aaKnown RBP4.13□□□□□ -1.75
SCN9A-206ENST00000472119 UBE2BP63146 152 aa4.13□□□□□ -1.75
SCN9A-206ENST00000472119 Q8NDZ9 215 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms