RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CDIP1Q9H305 208 aa9.32□□□□□ -0.92
CCDC88A-211ENST00000471947 Q6ZRU5 148 aa9.31□□□□□ -0.92
CCDC88A-211ENST00000471947 C9orf129Q5T035 196 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-211ENST00000471947 NKAPP1Q8N9T2 125 aa9.29□□□□□ -0.92
CCDC88A-211ENST00000471947 MDFIQ99750 246 aa9.29□□□□□ -0.92
CCDC88A-211ENST00000471947 TRBV10-3A0A0K0K1G6 114 aa9.29□□□□□ -0.92
CCDC88A-211ENST00000471947 TMEM126AQ9H061 195 aa9.29□□□□□ -0.92
CCDC88A-211ENST00000471947 H3BT86 120 aa9.28□□□□□ -0.92
CCDC88A-211ENST00000471947 FUSP35637 526 aaKnown RBP eCLIP9.28□□□□□ -0.922e-9■□□□□ 9.5
CCDC88A-211ENST00000471947 CASC10Q5T4H9 136 aa9.28□□□□□ -0.92
CCDC88A-211ENST00000471947 LINC00612Q8N6U2 182 aa9.28□□□□□ -0.92
CCDC88A-211ENST00000471947 ORMDL1Q9P0S3 153 aa9.28□□□□□ -0.92
CCDC88A-211ENST00000471947 TGP01266 2768 aa9.28□□□□□ -0.92
CCDC88A-211ENST00000471947 CSMD3Q7Z407 3707 aa9.27□□□□□ -0.92
CCDC88A-211ENST00000471947 FAM19A5Q7Z5A7 132 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-211ENST00000471947 C6orf48Q9UBA6 75 aa9.27□□□□□ -0.93
CCDC88A-211ENST00000471947 Q6ZQY7 126 aa9.27□□□□□ -0.93
CCDC88A-211ENST00000471947 SPATA25Q9BR10 227 aa9.27□□□□□ -0.93
CCDC88A-211ENST00000471947 K7EIL1 84 aa9.26□□□□□ -0.93
CCDC88A-211ENST00000471947 SDIM1Q6ZPB5 146 aa9.26□□□□□ -0.93
CCDC88A-211ENST00000471947 Q8NDZ9 215 aa9.26□□□□□ -0.93
CCDC88A-211ENST00000471947 KIAA0087Q14695 138 aa9.26□□□□□ -0.93
CCDC88A-211ENST00000471947 HAMPP81172 84 aa9.25□□□□□ -0.93
CCDC88A-211ENST00000471947 SCXQ7RTU7 201 aa9.25□□□□□ -0.93
CCDC88A-211ENST00000471947 SCGB1A1P11684 91 aa9.25□□□□□ -0.93
CCDC88A-211ENST00000471947 SYCNQ0VAF6 134 aa9.24□□□□□ -0.93
CCDC88A-211ENST00000471947 H0YGX0 51 aa9.23□□□□□ -0.93
CCDC88A-211ENST00000471947 CXCL5P42830 114 aa9.23□□□□□ -0.93
CCDC88A-211ENST00000471947 RPL28P46779 137 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-211ENST00000471947 A0A096LNI7 61 aa9.22□□□□□ -0.93
CCDC88A-211ENST00000471947 TRAV10A0A0B4J240 114 aa9.22□□□□□ -0.93
CCDC88A-211ENST00000471947 FAM236AA0A1B0GUQ0 79 aa9.21□□□□□ -0.93
CCDC88A-211ENST00000471947 FAM236BA0A1B0GV22 79 aa9.21□□□□□ -0.93
CCDC88A-211ENST00000471947 LINC00588Q9Y4M8 146 aa9.21□□□□□ -0.94
CCDC88A-211ENST00000471947 B5MCH6 92 aa9.2□□□□□ -0.94
CCDC88A-211ENST00000471947 USP17L23D6RBM5 183 aa9.2□□□□□ -0.94
CCDC88A-211ENST00000471947 A0A087WVE0 104 aa9.2□□□□□ -0.94
CCDC88A-211ENST00000471947 TRACP01848 142 aa9.2□□□□□ -0.94
CCDC88A-211ENST00000471947 INAFM2P0DMQ5 153 aa9.19□□□□□ -0.94
CCDC88A-211ENST00000471947 hADV29S1A0JD25 119 aa9.19□□□□□ -0.94
CCDC88A-211ENST00000471947 FAM168BA1KXE4 195 aa9.19□□□□□ -0.94
CCDC88A-211ENST00000471947 DIRC1Q969H9 104 aa9.19□□□□□ -0.94
CCDC88A-211ENST00000471947 UBE2BP63146 152 aa9.18□□□□□ -0.94
CCDC88A-211ENST00000471947 TRAV23DV6A0A075B6W5 121 aa9.17□□□□□ -0.94
CCDC88A-211ENST00000471947 C3orf22Q8N5N4 141 aa9.17□□□□□ -0.94
CCDC88A-211ENST00000471947 KLK5Q9Y337 293 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-211ENST00000471947 Q6ZRP5 223 aa9.16□□□□□ -0.94
CCDC88A-211ENST00000471947 Q8N814 137 aa9.16□□□□□ -0.94
CCDC88A-211ENST00000471947 COX7BP24311 80 aa9.15□□□□□ -0.94
CCDC88A-211ENST00000471947 ZNF73O43830 326 aaPredicted RBP9.15□□□□□ -0.95
CCDC88A-211ENST00000471947 FAM19A3Q7Z5A8 133 aa9.15□□□□□ -0.95
CCDC88A-211ENST00000471947 HIGD2AQ9BW72 106 aa9.15□□□□□ -0.95
CCDC88A-211ENST00000471947 DSCR8Q96T75 97 aa9.13□□□□□ -0.95
CCDC88A-211ENST00000471947 PPDPFQ9H3Y8 114 aa9.13□□□□□ -0.95
CCDC88A-211ENST00000471947 LINC00846Q9NV44 126 aa9.13□□□□□ -0.95
CCDC88A-211ENST00000471947 SS18L2Q9UHA2 77 aa9.13□□□□□ -0.95
CCDC88A-211ENST00000471947 C3orf84H3BNL1 204 aa9.13□□□□□ -0.95
CCDC88A-211ENST00000471947 ETDCA0A1B0GVM5 59 aa9.12□□□□□ -0.95
CCDC88A-211ENST00000471947 C15orf56Q8N910 161 aa9.12□□□□□ -0.95
CCDC88A-211ENST00000471947 RBM3P98179 157 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-211ENST00000471947 SMCR5Q8TEV8 140 aa9.11□□□□□ -0.95
CCDC88A-211ENST00000471947 PRR34Q9NV39 138 aa9.11□□□□□ -0.95
CCDC88A-211ENST00000471947 CHTF8P0CG12 524 aa9.11□□□□□ -0.95
CCDC88A-211ENST00000471947 NDUFC2-KCTD14E9PQ53 114 aa9.1□□□□□ -0.95
CCDC88A-211ENST00000471947 CCDC179H3BU77 68 aa9.1□□□□□ -0.95
CCDC88A-211ENST00000471947 NDUFV3P56181 108 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-211ENST00000471947 SERTAD4-AS1Q5TG53 156 aa9.1□□□□□ -0.95
CCDC88A-211ENST00000471947 COX17Q14061 63 aa9.1□□□□□ -0.95
CCDC88A-211ENST00000471947 A0A0G2JQZ4 141 aa9.09□□□□□ -0.95
CCDC88A-211ENST00000471947 A0A1W2PNN7 141 aa9.09□□□□□ -0.95
CCDC88A-211ENST00000471947 EGFEM1PQ0D2K5 195 aa9.09□□□□□ -0.95
CCDC88A-211ENST00000471947 TMEM256-PLSCR3K7ERE1 68 aa9.09□□□□□ -0.95
CCDC88A-211ENST00000471947 LINC01556Q5JQF7 62 aa9.08□□□□□ -0.96
CCDC88A-211ENST00000471947 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.08□□□□□ -0.96
CCDC88A-211ENST00000471947 UBL5Q9BZL1 73 aa9.07□□□□□ -0.96
CCDC88A-211ENST00000471947 DNAH10OSP0CZ25 163 aa9.07□□□□□ -0.96
CCDC88A-211ENST00000471947 LINC00575Q6W349 94 aa9.06□□□□□ -0.96
CCDC88A-211ENST00000471947 PRLHP81277 87 aa9.06□□□□□ -0.96
CCDC88A-211ENST00000471947 C7orf33Q8WU49 177 aa9.05□□□□□ -0.96
CCDC88A-211ENST00000471947 RMI2Q96E14 147 aa9.05□□□□□ -0.96
CCDC88A-211ENST00000471947 M0R378 163 aa9.05□□□□□ -0.96
CCDC88A-211ENST00000471947 FAM19A1Q7Z5A9 133 aa9.05□□□□□ -0.96
CCDC88A-211ENST00000471947 Q8N9L7 120 aa9.05□□□□□ -0.96
CCDC88A-211ENST00000471947 A0A1B0GX51 115 aa9.04□□□□□ -0.96
CCDC88A-211ENST00000471947 SRRM2Q9UQ35 2752 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-211ENST00000471947 LINC00643Q86TS7 51 aa9.03□□□□□ -0.96
CCDC88A-211ENST00000471947 ST20-AS1Q8NBB2 130 aa9.03□□□□□ -0.96
CCDC88A-211ENST00000471947 CCKP06307 115 aa9.02□□□□□ -0.97
CCDC88A-211ENST00000471947 NDUFC2O95298 119 aa9.02□□□□□ -0.97
CCDC88A-211ENST00000471947 VPREB1P12018 145 aa9.02□□□□□ -0.97
CCDC88A-211ENST00000471947 DEFB116Q30KQ4 102 aa9.02□□□□□ -0.97
CCDC88A-211ENST00000471947 C9orf153Q5TBE3 101 aa9.01□□□□□ -0.97
CCDC88A-211ENST00000471947 JMJD7-PLA2G4BH0Y9G9 81 aa9.01□□□□□ -0.97
CCDC88A-211ENST00000471947 WIPF1O43516 503 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 KRTAP1-5Q9BYS1 174 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 LY6G6CO95867 125 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 SVIPQ8NHG7 77 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 LINC00167Q96N53 147 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 C22orf24Q9Y442 160 aa9□□□□□ -0.97
CCDC88A-211ENST00000471947 M0QXV9 152 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms