RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 USMG5Q96IX5 58 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 CNFNQ9BYD5 112 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 NHSL1Q5SYE7 1610 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 EEA1Q15075 1411 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 TP53AIP1Q9HCN2 124 aa1.45□□□□□ -2.18
PTCD3-205ENST00000464541 RGPD1P0DJD0 1748 aa1.45□□□□□ -2.18
PTCD3-205ENST00000464541 LMTK2Q8IWU2 1503 aa1.45□□□□□ -2.18
PTCD3-205ENST00000464541 PAPPA2Q9BXP8 1791 aa1.44□□□□□ -2.18
PTCD3-205ENST00000464541 ARFGEF2Q9Y6D5 1785 aa1.44□□□□□ -2.18
PTCD3-205ENST00000464541 C10orf95Q9H7T3 257 aa1.44□□□□□ -2.18
PTCD3-205ENST00000464541 CRIPTQ9P021 101 aa1.44□□□□□ -2.18
PTCD3-205ENST00000464541 AHCTF1Q8WYP5 2266 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 LRRC37AA6NMS7 1700 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 NAV3Q8IVL0 2385 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 FXYD6-FXYD2A0A087WZ82 144 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 COX6A2Q02221 97 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 TULP4Q9NRJ4 1543 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 PAPPAQ13219 1627 aa1.43□□□□□ -2.18
PTCD3-205ENST00000464541 TIAM1Q13009 1591 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 CDC42BPGQ6DT37 1551 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 GOLGA4Q13439 2230 aaKnown RBP1.42□□□□□ -2.18
PTCD3-205ENST00000464541 CCDC180Q9P1Z9 1646 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 LCE6AA0A183 80 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 PLXNB2O15031 1838 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 COL6A6A6NMZ7 2263 aa1.42□□□□□ -2.18
PTCD3-205ENST00000464541 UBR3Q6ZT12 1888 aa1.41□□□□□ -2.18
PTCD3-205ENST00000464541 ABCA9Q8IUA7 1624 aa1.41□□□□□ -2.18
PTCD3-205ENST00000464541 UBL5Q9BZL1 73 aa1.41□□□□□ -2.18
PTCD3-205ENST00000464541 USP32Q8NFA0 1604 aa1.4□□□□□ -2.18
PTCD3-205ENST00000464541 CPSF4LA6NMK7 179 aaKnown RBP1.4□□□□□ -2.19
PTCD3-205ENST00000464541 I3L3M4 83 aa1.4□□□□□ -2.19
PTCD3-205ENST00000464541 PLCH1Q4KWH8 1693 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 RALGAPBQ86X10 1494 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 NDUFA4O00483 81 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 DEFB123Q8N688 67 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 PRO0255Q9UI72 69 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 SLIT1O75093 1534 aa1.39□□□□□ -2.19
PTCD3-205ENST00000464541 DIP2AQ14689 1571 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 ITSN1Q15811 1721 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 I3L2K1 104 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 ENHOQ6UWT2 76 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 FAM103A1Q9BTL3 118 aaKnown RBP1.38□□□□□ -2.19
PTCD3-205ENST00000464541 JMJD1CQ15652 2540 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 NHSQ6T4R5 1651 aa1.38□□□□□ -2.19
PTCD3-205ENST00000464541 THOC2Q8NI27 1593 aaKnown RBP1.38□□□□□ -2.19
PTCD3-205ENST00000464541 CFAP43Q8NDM7 1665 aa1.37□□□□□ -2.19
PTCD3-205ENST00000464541 A0A0D9SG42 100 aa1.37□□□□□ -2.19
PTCD3-205ENST00000464541 LINC01549A6NIU2 74 aa1.37□□□□□ -2.19
PTCD3-205ENST00000464541 Q8IZM0 81 aa1.37□□□□□ -2.19
PTCD3-205ENST00000464541 TIAM2Q8IVF5 1701 aa1.36□□□□□ -2.19
PTCD3-205ENST00000464541 CICQ96RK0 1608 aaPredicted RBP1.36□□□□□ -2.19
PTCD3-205ENST00000464541 ROS1P08922 2347 aa1.35□□□□□ -2.19
PTCD3-205ENST00000464541 FAM208BQ5VWN6 2430 aa1.35□□□□□ -2.19
PTCD3-205ENST00000464541 K7EQZ3 153 aa1.35□□□□□ -2.19
PTCD3-205ENST00000464541 CCL22O00626 93 aa1.35□□□□□ -2.19
PTCD3-205ENST00000464541 MRPL33O75394 65 aaKnown RBP1.35□□□□□ -2.19
PTCD3-205ENST00000464541 URB1O60287 2271 aaKnown RBP1.35□□□□□ -2.19
PTCD3-205ENST00000464541 EIF2AK4Q9P2K8 1649 aaKnown RBP1.34□□□□□ -2.19
PTCD3-205ENST00000464541 QSER1Q2KHR3 1735 aa1.34□□□□□ -2.2
PTCD3-205ENST00000464541 PLXNC1O60486 1568 aa1.34□□□□□ -2.2
PTCD3-205ENST00000464541 LAMC1P11047 1609 aa1.33□□□□□ -2.2
PTCD3-205ENST00000464541 PREX2Q70Z35 1606 aa1.33□□□□□ -2.2
PTCD3-205ENST00000464541 ZNF831Q5JPB2 1677 aa1.33□□□□□ -2.2
PTCD3-205ENST00000464541 POLR1AO95602 1720 aaPredicted RBP1.33□□□□□ -2.2
PTCD3-205ENST00000464541 COX6B1P14854 86 aa1.33□□□□□ -2.2
PTCD3-205ENST00000464541 BCORQ6W2J9 1755 aa1.33□□□□□ -2.2
PTCD3-205ENST00000464541 WIZO95785 1651 aa1.32□□□□□ -2.2
PTCD3-205ENST00000464541 ABCA10Q8WWZ4 1543 aa1.32□□□□□ -2.2
PTCD3-205ENST00000464541 COX6B2Q6YFQ2 88 aa1.32□□□□□ -2.2
PTCD3-205ENST00000464541 MRPL34Q9BQ48 92 aaKnown RBP1.32□□□□□ -2.2
PTCD3-205ENST00000464541 PREX1Q8TCU6 1659 aa1.32□□□□□ -2.2
PTCD3-205ENST00000464541 PRXQ9BXM0 1461 aa1.31□□□□□ -2.2
PTCD3-205ENST00000464541 ANKRD17O75179 2603 aaKnown RBP1.31□□□□□ -2.2
PTCD3-205ENST00000464541 SERF2P84101 59 aa1.31□□□□□ -2.2
PTCD3-205ENST00000464541 FMN2Q9NZ56 1722 aa1.3□□□□□ -2.2
PTCD3-205ENST00000464541 COL14A1Q05707 1796 aaKnown RBP1.3□□□□□ -2.2
PTCD3-205ENST00000464541 DEFB114Q30KQ6 69 aa1.3□□□□□ -2.2
PTCD3-205ENST00000464541 KCNQ1DNQ9H478 68 aa1.3□□□□□ -2.2
PTCD3-205ENST00000464541 NWD1Q149M9 1564 aa1.3□□□□□ -2.2
PTCD3-205ENST00000464541 DOT1LQ8TEK3 1739 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 FCER1GP30273 86 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 NMES1Q9C002 83 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 ABCA6Q8N139 1617 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 RICTORQ6R327 1708 aa1.29□□□□□ -2.2
PTCD3-205ENST00000464541 PARP4Q9UKK3 1724 aaKnown RBP1.29□□□□□ -2.2
PTCD3-205ENST00000464541 DEFB131BA0A096LNP1 70 aa1.28□□□□□ -2.2
PTCD3-205ENST00000464541 ETDCA0A1B0GVM5 59 aa1.28□□□□□ -2.2
PTCD3-205ENST00000464541 Q5VSD8 79 aa1.28□□□□□ -2.2
PTCD3-205ENST00000464541 CPS1P31327 1500 aa1.28□□□□□ -2.2
PTCD3-205ENST00000464541 CACNA1EQ15878 2313 aa1.27□□□□□ -2.21
PTCD3-205ENST00000464541 K7EMI3 77 aa1.27□□□□□ -2.21
PTCD3-205ENST00000464541 MAST1Q9Y2H9 1570 aa1.26□□□□□ -2.21
PTCD3-205ENST00000464541 ABCC6O95255 1503 aa1.26□□□□□ -2.21
PTCD3-205ENST00000464541 TNCP24821 2201 aa1.26□□□□□ -2.21
PTCD3-205ENST00000464541 NCBP2-AS2Q69YL0 99 aa1.26□□□□□ -2.21
PTCD3-205ENST00000464541 ALS2Q96Q42 1657 aa1.26□□□□□ -2.21
PTCD3-205ENST00000464541 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
PTCD3-205ENST00000464541 CDKN2A-AS1Q9UH64 79 aa1.25□□□□□ -2.21
PTCD3-205ENST00000464541 DOPEY2Q9Y3R5 2298 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms