RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 PRR3P79522 188 aaKnown RBP10.6□□□□□ -0.71
VPS52-215ENST00000464425 C9orf129Q5T035 196 aaKnown RBP10.6□□□□□ -0.71
VPS52-215ENST00000464425 FAM19A5Q7Z5A7 132 aaPredicted RBP10.6□□□□□ -0.71
VPS52-215ENST00000464425 LINC00158P58513 81 aa10.59□□□□□ -0.71
VPS52-215ENST00000464425 MEIG1Q5JSS6 88 aa10.59□□□□□ -0.71
VPS52-215ENST00000464425 J3QL48 77 aa10.58□□□□□ -0.72
VPS52-215ENST00000464425 SMIM13P0DJ93 91 aa10.58□□□□□ -0.72
VPS52-215ENST00000464425 XAGE1AQ9HD64 81 aa10.58□□□□□ -0.72
VPS52-215ENST00000464425 DMBT1Q9UGM3 2413 aaPredicted RBP10.58□□□□□ -0.72
VPS52-215ENST00000464425 A0A0J9YXY3 114 aa10.57□□□□□ -0.72
VPS52-215ENST00000464425 ZNF815PA8K554 130 aa10.57□□□□□ -0.72
VPS52-215ENST00000464425 KRTAP7-1Q8IUC3 87 aa10.57□□□□□ -0.72
VPS52-215ENST00000464425 SND1-IT1Q9HBX3 110 aa10.57□□□□□ -0.72
VPS52-215ENST00000464425 LRP1Q07954 4544 aaKnown RBP10.56□□□□□ -0.72
VPS52-215ENST00000464425 KRTAP29-1A8MX34 341 aaPredicted RBP10.56□□□□□ -0.72
VPS52-215ENST00000464425 PLA2G2DQ9UNK4 145 aa10.56□□□□□ -0.72
VPS52-215ENST00000464425 TTTY13Q9BZ97 58 aa10.55□□□□□ -0.72
VPS52-215ENST00000464425 A0A0U1RRA0 63 aa10.54□□□□□ -0.72
VPS52-215ENST00000464425 TIMM17BO60830 172 aa10.54□□□□□ -0.72
VPS52-215ENST00000464425 PCP2Q8IVA1 136 aa10.54□□□□□ -0.72
VPS52-215ENST00000464425 MIR7-3HGQ8N6C7 128 aa10.54□□□□□ -0.72
VPS52-215ENST00000464425 M0QXV9 152 aa10.53□□□□□ -0.72
VPS52-215ENST00000464425 PYY3Q5JQD4 70 aa10.53□□□□□ -0.72
VPS52-215ENST00000464425 PSORS1C2Q9UIG4 136 aa10.53□□□□□ -0.72
VPS52-215ENST00000464425 FAT3Q8TDW7 4589 aa10.53□□□□□ -0.72
VPS52-215ENST00000464425 LOC107984156A0A0G2JMH3 177 aa10.52□□□□□ -0.73
VPS52-215ENST00000464425 SERTAD4-AS1Q5TG53 156 aa10.52□□□□□ -0.73
VPS52-215ENST00000464425 ARL17AQ8IVW1 177 aa10.52□□□□□ -0.73
VPS52-215ENST00000464425 HERC1Q15751 4861 aa10.51□□□□□ -0.73
VPS52-215ENST00000464425 OXTP01178 125 aa10.51□□□□□ -0.73
VPS52-215ENST00000464425 KRTAP11-1Q8IUC1 163 aa10.51□□□□□ -0.73
VPS52-215ENST00000464425 LITAFQ99732 161 aa10.51□□□□□ -0.73
VPS52-215ENST00000464425 IGLV5-37A0A075B6J1 123 aa10.5□□□□□ -0.73
VPS52-215ENST00000464425 RPL24P83731 157 aaKnown RBP10.5□□□□□ -0.73
VPS52-215ENST00000464425 C1orf137Q5JT78 98 aa10.5□□□□□ -0.73
VPS52-215ENST00000464425 ADAMTSL4-AS1Q5T5F5 129 aa10.5□□□□□ -0.73
VPS52-215ENST00000464425 VAMP8Q9BV40 100 aa10.5□□□□□ -0.73
VPS52-215ENST00000464425 TP73-AS1Q9UF72 201 aa10.5□□□□□ -0.73
VPS52-215ENST00000464425 UBE2BP63146 152 aa10.49□□□□□ -0.73
VPS52-215ENST00000464425 SCGB1D4Q6XE38 83 aa10.49□□□□□ -0.73
VPS52-215ENST00000464425 DAND5Q8N907 189 aa10.49□□□□□ -0.73
VPS52-215ENST00000464425 C22orf24Q9Y442 160 aa10.49□□□□□ -0.73
VPS52-215ENST00000464425 COX8AP10176 69 aa10.48□□□□□ -0.73
VPS52-215ENST00000464425 PAM16Q9Y3D7 125 aa10.48□□□□□ -0.73
VPS52-215ENST00000464425 DLEU1O43261 78 aa10.47□□□□□ -0.73
VPS52-215ENST00000464425 VPREB1P12018 145 aa10.47□□□□□ -0.73
VPS52-215ENST00000464425 SRSF9Q13242 221 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS52-215ENST00000464425 SPATA45Q537H7 98 aa10.47□□□□□ -0.73
VPS52-215ENST00000464425 LBHQ53QV2 105 aaPredicted RBP10.47□□□□□ -0.73
VPS52-215ENST00000464425 SPINK6Q6UWN8 80 aa10.47□□□□□ -0.73
VPS52-215ENST00000464425 BOD1L2Q8IYS8 172 aa10.47□□□□□ -0.73
VPS52-215ENST00000464425 TMEM238C9JI98 176 aa10.46□□□□□ -0.73
VPS52-215ENST00000464425 Q6ZVH6 145 aa10.45□□□□□ -0.74
VPS52-215ENST00000464425 MRPL55Q7Z7F7 128 aaKnown RBP10.45□□□□□ -0.74
VPS52-215ENST00000464425 NKAPP1Q8N9T2 125 aa10.45□□□□□ -0.74
VPS52-215ENST00000464425 MIEN1Q9BRT3 115 aa10.45□□□□□ -0.74
VPS52-215ENST00000464425 SPANXDQ9BXN6 97 aa10.45□□□□□ -0.74
VPS52-215ENST00000464425 SPANXCQ9NY87 97 aa10.45□□□□□ -0.74
VPS52-215ENST00000464425 Q8NDZ9 215 aa10.44□□□□□ -0.74
VPS52-215ENST00000464425 NDUFC2O95298 119 aa10.43□□□□□ -0.74
VPS52-215ENST00000464425 IGLV7-43P04211 117 aa10.43□□□□□ -0.74
VPS52-215ENST00000464425 SOSTDC1Q6X4U4 206 aa10.43□□□□□ -0.74
VPS52-215ENST00000464425 LINC00308Q8TCZ7 52 aa10.43□□□□□ -0.74
VPS52-215ENST00000464425 PPDPFQ9H3Y8 114 aa10.43□□□□□ -0.74
VPS52-215ENST00000464425 IFITM1P13164 125 aa10.42□□□□□ -0.74
VPS52-215ENST00000464425 COPS9Q8WXC6 57 aa10.42□□□□□ -0.74
VPS52-215ENST00000464425 C14orf144Q96I85 54 aa10.42□□□□□ -0.74
VPS52-215ENST00000464425 LINC00167Q96N53 147 aa10.42□□□□□ -0.74
VPS52-215ENST00000464425 LOC105371267A0A1B0GV96 52 aa10.41□□□□□ -0.74
VPS52-215ENST00000464425 GAGE10A6NGK3 116 aa10.41□□□□□ -0.74
VPS52-215ENST00000464425 EIF4EBP3O60516 100 aaPredicted RBP10.41□□□□□ -0.74
VPS52-215ENST00000464425 SPANXB1Q9NS25 103 aaPredicted RBP10.41□□□□□ -0.74
VPS52-215ENST00000464425 M0R378 163 aa10.4□□□□□ -0.74
VPS52-215ENST00000464425 NPC2P61916 151 aa10.4□□□□□ -0.74
VPS52-215ENST00000464425 S100A12P80511 92 aa10.4□□□□□ -0.74
VPS52-215ENST00000464425 SLC25A34Q6PIV7 304 aa10.4□□□□□ -0.74
VPS52-215ENST00000464425 TRBV10-2A0A0K0K1G8 114 aa10.39□□□□□ -0.75
VPS52-215ENST00000464425 RPL37AP8A6NKH3 93 aa10.39□□□□□ -0.75
VPS52-215ENST00000464425 MT1HL1P0DM35 61 aa10.39□□□□□ -0.75
VPS52-215ENST00000464425 REG3GQ6UW15 175 aa10.39□□□□□ -0.75
VPS52-215ENST00000464425 IGLV1-50A0A075B6I6 118 aa10.37□□□□□ -0.75
VPS52-215ENST00000464425 SMIM6P0DI80 62 aa10.37□□□□□ -0.75
VPS52-215ENST00000464425 LINC01600Q96MT4 127 aa10.37□□□□□ -0.75
VPS52-215ENST00000464425 HIGD1BQ9P298 99 aa10.37□□□□□ -0.75
VPS52-215ENST00000464425 MUSTN1Q8IVN3 82 aa10.36□□□□□ -0.75
VPS52-215ENST00000464425 NCR3O14931 201 aa10.35□□□□□ -0.75
VPS52-215ENST00000464425 DIRC1Q969H9 104 aa10.35□□□□□ -0.75
VPS52-215ENST00000464425 LINC00518Q8N0U6 118 aa10.34□□□□□ -0.75
VPS52-215ENST00000464425 TNXBP22105 4242 aa10.34□□□□□ -0.75
VPS52-215ENST00000464425 IGKV2-28A0A075B6P5 120 aa10.33□□□□□ -0.76
VPS52-215ENST00000464425 IGKV2D-28P01615 120 aa10.33□□□□□ -0.76
VPS52-215ENST00000464425 H0Y9J4 135 aa10.32□□□□□ -0.76
VPS52-215ENST00000464425 C2orf91Q6ZV80 131 aa10.32□□□□□ -0.76
VPS52-215ENST00000464425 HIST1H4GQ99525 98 aa10.32□□□□□ -0.76
VPS52-215ENST00000464425 ZNF861PO60384 105 aa10.31□□□□□ -0.76
VPS52-215ENST00000464425 BCE1O60756 84 aa10.31□□□□□ -0.76
VPS52-215ENST00000464425 IGLV6-57P01721 117 aa10.31□□□□□ -0.76
VPS52-215ENST00000464425 KCNQ1DNQ9H478 68 aa10.31□□□□□ -0.76
VPS52-215ENST00000464425 TRBV10-3A0A0K0K1G6 114 aa10.3□□□□□ -0.76
VPS52-215ENST00000464425 DDTP30046 118 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms