RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 GAGE10A6NGK3 116 aa11.43□□□□□ -0.58
COL9A3-203ENST00000462700 DPM2O94777 84 aa11.43□□□□□ -0.58
COL9A3-203ENST00000462700 LINC00158P58513 81 aa11.43□□□□□ -0.58
COL9A3-203ENST00000462700 PMCHL2Q9BQD1 86 aa11.43□□□□□ -0.58
COL9A3-203ENST00000462700 MAP1LC3CQ9BXW4 147 aa11.43□□□□□ -0.58
COL9A3-203ENST00000462700 HMCN2Q8NDA2 5059 aa11.42□□□□□ -0.58
COL9A3-203ENST00000462700 RPL37AP8A6NKH3 93 aa11.42□□□□□ -0.58
COL9A3-203ENST00000462700 VPREB1P12018 145 aa11.42□□□□□ -0.58
COL9A3-203ENST00000462700 KRTAP10-8P60410 259 aa11.42□□□□□ -0.58
COL9A3-203ENST00000462700 IGKCP01834 107 aa11.41□□□□□ -0.58
COL9A3-203ENST00000462700 HERV-K104P63124 156 aa11.41□□□□□ -0.58
COL9A3-203ENST00000462700 NDUFA12Q9UI09 145 aa11.41□□□□□ -0.58
COL9A3-203ENST00000462700 A0A0U1RRA0 63 aa11.4□□□□□ -0.58
COL9A3-203ENST00000462700 LEPROTO15243 131 aa11.4□□□□□ -0.58
COL9A3-203ENST00000462700 TSPEAR-AS2P59090 65 aa11.4□□□□□ -0.58
COL9A3-203ENST00000462700 ZNF861PO60384 105 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 BCE1O60756 84 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 SMIM13P0DJ93 91 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 HERVK_113P61574 105 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 RPL24P83731 157 aaKnown RBP11.39□□□□□ -0.59
COL9A3-203ENST00000462700 MEIG1Q5JSS6 88 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 Q8NDZ9 215 aa11.39□□□□□ -0.59
COL9A3-203ENST00000462700 MYMXA0A1B0GTQ4 84 aa11.38□□□□□ -0.59
COL9A3-203ENST00000462700 PLEKHB2Q96CS7 222 aa11.38□□□□□ -0.59
COL9A3-203ENST00000462700 SYS1-DBNDD2H3BUS1 97 aa11.37□□□□□ -0.59
COL9A3-203ENST00000462700 IGKV2-28A0A075B6P5 120 aa11.36□□□□□ -0.59
COL9A3-203ENST00000462700 LINC00587B1AMM8 73 aa11.36□□□□□ -0.59
COL9A3-203ENST00000462700 J3QQQ9 107 aa11.36□□□□□ -0.59
COL9A3-203ENST00000462700 IGKV2D-28P01615 120 aa11.36□□□□□ -0.59
COL9A3-203ENST00000462700 COA6Q5JTJ3 125 aaKnown RBP11.36□□□□□ -0.59
COL9A3-203ENST00000462700 IGLV1-50A0A075B6I6 118 aa11.35□□□□□ -0.59
COL9A3-203ENST00000462700 ATP6V1G1O75348 118 aa11.35□□□□□ -0.59
COL9A3-203ENST00000462700 KRTAP1-4P0C5Y4 121 aa11.35□□□□□ -0.59
COL9A3-203ENST00000462700 MIR7-3HGQ8N6C7 128 aa11.35□□□□□ -0.59
COL9A3-203ENST00000462700 RPL28P46779 137 aaKnown RBP11.34□□□□□ -0.59
COL9A3-203ENST00000462700 LGALS3P17931 250 aaKnown RBP11.32□□□□□ -0.6
COL9A3-203ENST00000462700 NMUP48645 174 aa11.32□□□□□ -0.6
COL9A3-203ENST00000462700 PRR26Q8N8Z3 221 aa11.32□□□□□ -0.6
COL9A3-203ENST00000462700 S100A1P23297 94 aa11.31□□□□□ -0.6
COL9A3-203ENST00000462700 LINC01545Q5VT33 79 aa11.31□□□□□ -0.6
COL9A3-203ENST00000462700 PET117Q6UWS5 81 aa11.31□□□□□ -0.6
COL9A3-203ENST00000462700 E9PLD3 99 aa11.3□□□□□ -0.6
COL9A3-203ENST00000462700 KRTAP13-1Q8IUC0 172 aa11.3□□□□□ -0.6
COL9A3-203ENST00000462700 BOD1L2Q8IYS8 172 aa11.3□□□□□ -0.6
COL9A3-203ENST00000462700 TMEM238C9JI98 176 aa11.29□□□□□ -0.6
COL9A3-203ENST00000462700 M0R378 163 aa11.29□□□□□ -0.6
COL9A3-203ENST00000462700 C3orf79P0CE67 100 aa11.29□□□□□ -0.6
COL9A3-203ENST00000462700 UBE2AP49459 152 aa11.29□□□□□ -0.6
COL9A3-203ENST00000462700 TMEM126AQ9H061 195 aa11.29□□□□□ -0.6
COL9A3-203ENST00000462700 DAND5Q8N907 189 aa11.27□□□□□ -0.61
COL9A3-203ENST00000462700 IGKV2D-26A0A0A0MRZ7 120 aa11.25□□□□□ -0.61
COL9A3-203ENST00000462700 NCR3O14931 201 aa11.25□□□□□ -0.61
COL9A3-203ENST00000462700 KRTDAPP60985 99 aa11.25□□□□□ -0.61
COL9A3-203ENST00000462700 FAM19A1Q7Z5A9 133 aa11.25□□□□□ -0.61
COL9A3-203ENST00000462700 LOC107984156A0A0G2JMH3 177 aa11.24□□□□□ -0.61
COL9A3-203ENST00000462700 PRLHP81277 87 aa11.24□□□□□ -0.61
COL9A3-203ENST00000462700 ARL17AQ8IVW1 177 aa11.24□□□□□ -0.61
COL9A3-203ENST00000462700 A0A0J9YXY3 114 aa11.23□□□□□ -0.61
COL9A3-203ENST00000462700 RPL13AP40429 203 aaKnown RBP11.23□□□□□ -0.61
COL9A3-203ENST00000462700 MIEN1Q9BRT3 115 aa11.21□□□□□ -0.61
COL9A3-203ENST00000462700 PRYO14603 147 aa11.2□□□□□ -0.62
COL9A3-203ENST00000462700 C20orf202A1L168 122 aa11.19□□□□□ -0.62
COL9A3-203ENST00000462700 ADAMTSL4-AS1Q5T5F5 129 aa11.19□□□□□ -0.62
COL9A3-203ENST00000462700 A0A087X002 238 aa11.18□□□□□ -0.62
COL9A3-203ENST00000462700 TRBV10-3A0A0K0K1G6 114 aa11.18□□□□□ -0.62
COL9A3-203ENST00000462700 KCNQ1DNQ9H478 68 aa11.18□□□□□ -0.62
COL9A3-203ENST00000462700 TRBV10-2A0A0K0K1G8 114 aa11.17□□□□□ -0.62
COL9A3-203ENST00000462700 NDUFC2O95298 119 aa11.17□□□□□ -0.62
COL9A3-203ENST00000462700 SPRR1AP35321 89 aa11.17□□□□□ -0.62
COL9A3-203ENST00000462700 SOSTDC1Q6X4U4 206 aa11.17□□□□□ -0.62
COL9A3-203ENST00000462700 SPANXB1Q9NS25 103 aaPredicted RBP11.17□□□□□ -0.62
COL9A3-203ENST00000462700 ZNF815PA8K554 130 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 CRYGAP11844 174 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 NPC2P61916 151 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 LITAFQ99732 161 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 TTTY13Q9BZ97 58 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 ANAPC11Q9NYG5 84 aa11.16□□□□□ -0.62
COL9A3-203ENST00000462700 EIF4EBP3O60516 100 aaPredicted RBP11.15□□□□□ -0.62
COL9A3-203ENST00000462700 LINC00337Q8N6G1 96 aa11.15□□□□□ -0.62
COL9A3-203ENST00000462700 HIGD2AQ9BW72 106 aa11.15□□□□□ -0.62
COL9A3-203ENST00000462700 TIMM17BO60830 172 aa11.14□□□□□ -0.63
COL9A3-203ENST00000462700 DDTP30046 118 aa11.14□□□□□ -0.63
COL9A3-203ENST00000462700 HIST3H2BBQ8N257 126 aa11.14□□□□□ -0.63
COL9A3-203ENST00000462700 KRTAP4-16G5E9R7 235 aaPredicted RBP11.13□□□□□ -0.63
COL9A3-203ENST00000462700 S100A12P80511 92 aa11.13□□□□□ -0.63
COL9A3-203ENST00000462700 ATOH7Q8N100 152 aa11.13□□□□□ -0.63
COL9A3-203ENST00000462700 FAM229BQ4G0N7 80 aa11.12□□□□□ -0.63
COL9A3-203ENST00000462700 HIST1H2BLQ99880 126 aa11.12□□□□□ -0.63
COL9A3-203ENST00000462700 ETDCA0A1B0GVM5 59 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 S100A2P29034 98 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 AKR1D1P51857 326 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 ANKRD39Q53RE8 183 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 TYMSOSQ8TAI1 123 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 LINC00308Q8TCZ7 52 aa11.11□□□□□ -0.63
COL9A3-203ENST00000462700 KRTAP13-2Q52LG2 175 aa11.1□□□□□ -0.63
COL9A3-203ENST00000462700 S100A7L2Q5SY68 101 aa11.1□□□□□ -0.63
COL9A3-203ENST00000462700 IGLV6-57P01721 117 aa11.09□□□□□ -0.63
COL9A3-203ENST00000462700 S100A6P06703 90 aa11.09□□□□□ -0.63
COL9A3-203ENST00000462700 UBR4Q5T4S7 5183 aa11.09□□□□□ -0.63
COL9A3-203ENST00000462700 SPANXCQ9NY87 97 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms