RNA–Protein interactions for RNA: ENST00000461195.5

TRAF4-207, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 787 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-207ENST00000461195 HIST1H2BBP33778 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 RPL28P46779 137 aaKnown RBP13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST1H2BDP58876 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST1H2BCP62807 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HERV-K104P63124 156 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST2H2BEQ16778 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST1H2BHQ93079 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST1H2BNQ99877 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 HIST1H2BMQ99879 126 aa13.55□□□□□ -0.24
TRAF4-207ENST00000461195 A0A0U1RRA0 63 aa13.54□□□□□ -0.24
TRAF4-207ENST00000461195 PRR26Q8N8Z3 221 aa13.54□□□□□ -0.24
TRAF4-207ENST00000461195 MAP1LC3CQ9BXW4 147 aa13.54□□□□□ -0.24
TRAF4-207ENST00000461195 NDUFA12Q9UI09 145 aa13.54□□□□□ -0.24
TRAF4-207ENST00000461195 IGKV2-28A0A075B6P5 120 aa13.53□□□□□ -0.24
TRAF4-207ENST00000461195 IGKV2D-28P01615 120 aa13.53□□□□□ -0.24
TRAF4-207ENST00000461195 KRTAP1-4P0C5Y4 121 aa13.53□□□□□ -0.24
TRAF4-207ENST00000461195 MEIG1Q5JSS6 88 aa13.53□□□□□ -0.24
TRAF4-207ENST00000461195 MYMXA0A1B0GTQ4 84 aa13.52□□□□□ -0.25
TRAF4-207ENST00000461195 LEPROTO15243 131 aa13.52□□□□□ -0.25
TRAF4-207ENST00000461195 ATP6V1G1O75348 118 aa13.52□□□□□ -0.25
TRAF4-207ENST00000461195 SMIM13P0DJ93 91 aa13.52□□□□□ -0.25
TRAF4-207ENST00000461195 PMCHL2Q9BQD1 86 aa13.52□□□□□ -0.25
TRAF4-207ENST00000461195 IGLV1-50A0A075B6I6 118 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 LINC00587B1AMM8 73 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 IGKCP01834 107 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 HERVK_113P61574 105 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 Q8NDZ9 215 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 PLEKHB2Q96CS7 222 aa13.51□□□□□ -0.25
TRAF4-207ENST00000461195 TSPEAR-AS2P59090 65 aa13.49□□□□□ -0.25
TRAF4-207ENST00000461195 UBE2AP49459 152 aa13.48□□□□□ -0.25
TRAF4-207ENST00000461195 LRP2P98164 4655 aa13.47□□□□□ -0.25
TRAF4-207ENST00000461195 MIR7-3HGQ8N6C7 128 aa13.47□□□□□ -0.25
TRAF4-207ENST00000461195 J3QQQ9 107 aa13.46□□□□□ -0.25
TRAF4-207ENST00000461195 KRTAP13-1Q8IUC0 172 aa13.46□□□□□ -0.25
TRAF4-207ENST00000461195 RPL13AP40429 203 aaKnown RBP13.45□□□□□ -0.26
TRAF4-207ENST00000461195 TMEM126AQ9H061 195 aa13.45□□□□□ -0.26
TRAF4-207ENST00000461195 RNF213Q63HN8 5207 aa13.45□□□□□ -0.26
TRAF4-207ENST00000461195 TMEM238C9JI98 176 aa13.44□□□□□ -0.26
TRAF4-207ENST00000461195 SYS1-DBNDD2H3BUS1 97 aa13.44□□□□□ -0.26
TRAF4-207ENST00000461195 NMUP48645 174 aa13.44□□□□□ -0.26
TRAF4-207ENST00000461195 BOD1L2Q8IYS8 172 aa13.44□□□□□ -0.26
TRAF4-207ENST00000461195 M0R378 163 aa13.43□□□□□ -0.26
TRAF4-207ENST00000461195 LGALS3P17931 250 aaKnown RBP13.43□□□□□ -0.26
TRAF4-207ENST00000461195 FAM19A1Q7Z5A9 133 aa13.41□□□□□ -0.26
TRAF4-207ENST00000461195 PRLHP81277 87 aa13.39□□□□□ -0.27
TRAF4-207ENST00000461195 COA6Q5JTJ3 125 aaKnown RBP13.39□□□□□ -0.27
TRAF4-207ENST00000461195 E9PLD3 99 aa13.38□□□□□ -0.27
TRAF4-207ENST00000461195 PET117Q6UWS5 81 aa13.38□□□□□ -0.27
TRAF4-207ENST00000461195 IGKV2D-26A0A0A0MRZ7 120 aa13.37□□□□□ -0.27
TRAF4-207ENST00000461195 NCR3O14931 201 aa13.37□□□□□ -0.27
TRAF4-207ENST00000461195 LINC01545Q5VT33 79 aa13.37□□□□□ -0.27
TRAF4-207ENST00000461195 DAND5Q8N907 189 aa13.37□□□□□ -0.27
TRAF4-207ENST00000461195 LOC107984156A0A0G2JMH3 177 aa13.35□□□□□ -0.27
TRAF4-207ENST00000461195 ARL17AQ8IVW1 177 aa13.35□□□□□ -0.27
TRAF4-207ENST00000461195 CRYGAP11844 174 aa13.34□□□□□ -0.27
TRAF4-207ENST00000461195 A0A087X002 238 aa13.33□□□□□ -0.28
TRAF4-207ENST00000461195 PRYO14603 147 aa13.33□□□□□ -0.28
TRAF4-207ENST00000461195 C3orf79P0CE67 100 aa13.33□□□□□ -0.28
TRAF4-207ENST00000461195 MIEN1Q9BRT3 115 aa13.32□□□□□ -0.28
TRAF4-207ENST00000461195 A0A0J9YXY3 114 aa13.31□□□□□ -0.28
TRAF4-207ENST00000461195 KCNQ1DNQ9H478 68 aa13.31□□□□□ -0.28
TRAF4-207ENST00000461195 ANAPC11Q9NYG5 84 aa13.31□□□□□ -0.28
TRAF4-207ENST00000461195 KRTDAPP60985 99 aa13.3□□□□□ -0.28
TRAF4-207ENST00000461195 TRBV10-3A0A0K0K1G6 114 aa13.29□□□□□ -0.28
TRAF4-207ENST00000461195 FAM229BQ4G0N7 80 aa13.29□□□□□ -0.28
TRAF4-207ENST00000461195 TYMSOSQ8TAI1 123 aa13.29□□□□□ -0.28
TRAF4-207ENST00000461195 TRBV10-2A0A0K0K1G8 114 aa13.28□□□□□ -0.28
TRAF4-207ENST00000461195 S100A1P23297 94 aa13.28□□□□□ -0.28
TRAF4-207ENST00000461195 S100A12P80511 92 aa13.28□□□□□ -0.28
TRAF4-207ENST00000461195 HIGD2AQ9BW72 106 aa13.28□□□□□ -0.28
TRAF4-207ENST00000461195 SPRR1AP35321 89 aa13.27□□□□□ -0.29
TRAF4-207ENST00000461195 LINC00337Q8N6G1 96 aa13.27□□□□□ -0.29
TRAF4-207ENST00000461195 NDUFC2O95298 119 aa13.26□□□□□ -0.29
TRAF4-207ENST00000461195 ADAMTSL4-AS1Q5T5F5 129 aa13.26□□□□□ -0.29
TRAF4-207ENST00000461195 SPANXB1Q9NS25 103 aaPredicted RBP13.26□□□□□ -0.29
TRAF4-207ENST00000461195 ETDCA0A1B0GVM5 59 aa13.24□□□□□ -0.29
TRAF4-207ENST00000461195 C20orf202A1L168 122 aa13.24□□□□□ -0.29
TRAF4-207ENST00000461195 DDTP30046 118 aa13.24□□□□□ -0.29
TRAF4-207ENST00000461195 KRTAP13-2Q52LG2 175 aa13.24□□□□□ -0.29
TRAF4-207ENST00000461195 KRTAP4-16G5E9R7 235 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-207ENST00000461195 NPC2P61916 151 aa13.23□□□□□ -0.29
TRAF4-207ENST00000461195 SOSTDC1Q6X4U4 206 aa13.23□□□□□ -0.29
TRAF4-207ENST00000461195 ZNF815PA8K554 130 aa13.22□□□□□ -0.29
TRAF4-207ENST00000461195 TIMM17BO60830 172 aa13.21□□□□□ -0.29
TRAF4-207ENST00000461195 EIF4EBP3O60516 100 aaPredicted RBP13.2□□□□□ -0.3
TRAF4-207ENST00000461195 S100A7L2Q5SY68 101 aa13.2□□□□□ -0.3
TRAF4-207ENST00000461195 LITAFQ99732 161 aa13.2□□□□□ -0.3
TRAF4-207ENST00000461195 ZNF706Q9Y5V0 76 aaPredicted RBP13.19□□□□□ -0.3
TRAF4-207ENST00000461195 TSPAN13O95857 204 aa13.18□□□□□ -0.3
TRAF4-207ENST00000461195 IGLV6-57P01721 117 aa13.18□□□□□ -0.3
TRAF4-207ENST00000461195 SPRR4Q96PI1 79 aa13.18□□□□□ -0.3
TRAF4-207ENST00000461195 TTTY13Q9BZ97 58 aa13.18□□□□□ -0.3
TRAF4-207ENST00000461195 AKR1D1P51857 326 aa13.17□□□□□ -0.3
TRAF4-207ENST00000461195 LINC00308Q8TCZ7 52 aa13.17□□□□□ -0.3
TRAF4-207ENST00000461195 SMCR5Q8TEV8 140 aa13.17□□□□□ -0.3
TRAF4-207ENST00000461195 B5MCH6 92 aa13.16□□□□□ -0.3
TRAF4-207ENST00000461195 ATOH7Q8N100 152 aa13.14□□□□□ -0.31
TRAF4-207ENST00000461195 SPANXCQ9NY87 97 aa13.14□□□□□ -0.31
TRAF4-207ENST00000461195 TRAV23DV6A0A075B6W5 121 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms