RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SVBPQ8N300 66 aa13.31□□□□□ -0.28
PTPN4-207ENST00000460162 CHTOPQ9Y3Y2 248 aaKnown RBP13.31□□□□□ -0.28
PTPN4-207ENST00000460162 Q8NDZ9 215 aa13.3□□□□□ -0.28
PTPN4-207ENST00000460162 LINC00304Q8N9R0 145 aa13.29□□□□□ -0.28
PTPN4-207ENST00000460162 TRAV12-1A0A0B4J245 112 aa13.28□□□□□ -0.28
PTPN4-207ENST00000460162 CHCHD1Q96BP2 118 aaKnown RBP13.28□□□□□ -0.28
PTPN4-207ENST00000460162 MUC2Q02817 5179 aa13.28□□□□□ -0.28
PTPN4-207ENST00000460162 IGKV2D-26A0A0A0MRZ7 120 aa13.27□□□□□ -0.29
PTPN4-207ENST00000460162 TMEM223A0PJW6 202 aa13.27□□□□□ -0.29
PTPN4-207ENST00000460162 LINC00158P58513 81 aa13.26□□□□□ -0.29
PTPN4-207ENST00000460162 IFI27L1Q96BM0 104 aa13.25□□□□□ -0.29
PTPN4-207ENST00000460162 CTAG1AP78358 180 aa13.24□□□□□ -0.29
PTPN4-207ENST00000460162 CBLN2Q8IUK8 224 aa13.23□□□□□ -0.29
PTPN4-207ENST00000460162 PLEKHB2Q96CS7 222 aa13.23□□□□□ -0.29
PTPN4-207ENST00000460162 YPEL4Q96NS1 127 aa13.23□□□□□ -0.29
PTPN4-207ENST00000460162 HIGD2AQ9BW72 106 aa13.21□□□□□ -0.29
PTPN4-207ENST00000460162 A0A0U1RRA0 63 aa13.2□□□□□ -0.3
PTPN4-207ENST00000460162 RETNLBQ9BQ08 111 aa13.2□□□□□ -0.3
PTPN4-207ENST00000460162 A0A0U1RQV1 116 aa13.19□□□□□ -0.3
PTPN4-207ENST00000460162 HERV-K104P63124 156 aa13.18□□□□□ -0.3
PTPN4-207ENST00000460162 MEIG1Q5JSS6 88 aa13.18□□□□□ -0.3
PTPN4-207ENST00000460162 PRYO14603 147 aa13.17□□□□□ -0.3
PTPN4-207ENST00000460162 ATP6V1G1O75348 118 aa13.17□□□□□ -0.3
PTPN4-207ENST00000460162 HSBP1O75506 76 aa13.17□□□□□ -0.3
PTPN4-207ENST00000460162 SMIM13P0DJ93 91 aa13.17□□□□□ -0.3
PTPN4-207ENST00000460162 ZNF706Q9Y5V0 76 aaPredicted RBP13.16□□□□□ -0.3
PTPN4-207ENST00000460162 TPRXLQ17RH7 258 aa13.15□□□□□ -0.3
PTPN4-207ENST00000460162 BOD1L2Q8IYS8 172 aa13.15□□□□□ -0.3
PTPN4-207ENST00000460162 C3orf22Q8N5N4 141 aa13.15□□□□□ -0.3
PTPN4-207ENST00000460162 SPRR4Q96PI1 79 aa13.15□□□□□ -0.3
PTPN4-207ENST00000460162 LINC00587B1AMM8 73 aa13.14□□□□□ -0.31
PTPN4-207ENST00000460162 MIR7-3HGQ8N6C7 128 aa13.14□□□□□ -0.31
PTPN4-207ENST00000460162 LINC00337Q8N6G1 96 aa13.13□□□□□ -0.31
PTPN4-207ENST00000460162 NDUFA12Q9UI09 145 aa13.13□□□□□ -0.31
PTPN4-207ENST00000460162 NCR3O14931 201 aa13.12□□□□□ -0.31
PTPN4-207ENST00000460162 SPRR1AP35321 89 aa13.12□□□□□ -0.31
PTPN4-207ENST00000460162 FAM19A2Q8N3H0 131 aa13.12□□□□□ -0.31
PTPN4-207ENST00000460162 MAP1LC3CQ9BXW4 147 aa13.11□□□□□ -0.31
PTPN4-207ENST00000460162 KCNQ1DNQ9H478 68 aa13.11□□□□□ -0.31
PTPN4-207ENST00000460162 MYMXA0A1B0GTQ4 84 aa13.1□□□□□ -0.31
PTPN4-207ENST00000460162 SPAG11AQ6PDA7 123 aa13.1□□□□□ -0.31
PTPN4-207ENST00000460162 IGLV7-46A0A075B6I9 117 aa13.09□□□□□ -0.31
PTPN4-207ENST00000460162 CDIP1Q9H305 208 aa13.08□□□□□ -0.32
PTPN4-207ENST00000460162 ETDCA0A1B0GVM5 59 aa13.07□□□□□ -0.32
PTPN4-207ENST00000460162 KRTAP4-16G5E9R7 235 aaPredicted RBP13.07□□□□□ -0.32
PTPN4-207ENST00000460162 H0Y8G0 127 aa13.07□□□□□ -0.32
PTPN4-207ENST00000460162 LEPROTL1O95214 131 aa13.06□□□□□ -0.32
PTPN4-207ENST00000460162 S100A12P80511 92 aa13.06□□□□□ -0.32
PTPN4-207ENST00000460162 TRBV10-3A0A0K0K1G6 114 aa13.05□□□□□ -0.32
PTPN4-207ENST00000460162 PLNP26678 52 aa13.05□□□□□ -0.32
PTPN4-207ENST00000460162 TSPEAR-AS2P59090 65 aa13.05□□□□□ -0.32
PTPN4-207ENST00000460162 LEPROTO15243 131 aa13.04□□□□□ -0.32
PTPN4-207ENST00000460162 TRGC2P03986 189 aa13.04□□□□□ -0.32
PTPN4-207ENST00000460162 LOC107984156A0A0G2JMH3 177 aa13.03□□□□□ -0.32
PTPN4-207ENST00000460162 LINC00310P59036 64 aa13.03□□□□□ -0.32
PTPN4-207ENST00000460162 ARL17AQ8IVW1 177 aa13.03□□□□□ -0.32
PTPN4-207ENST00000460162 SERF1AO75920 110 aa13.02□□□□□ -0.33
PTPN4-207ENST00000460162 SMCR5Q8TEV8 140 aa13.02□□□□□ -0.33
PTPN4-207ENST00000460162 C4orf48Q5BLP8 95 aa13.01□□□□□ -0.33
PTPN4-207ENST00000460162 FP248Q71RG6 208 aaPredicted RBP13.01□□□□□ -0.33
PTPN4-207ENST00000460162 PPDPFQ9H3Y8 114 aa13.01□□□□□ -0.33
PTPN4-207ENST00000460162 TRBV10-2A0A0K0K1G8 114 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 HERVK_113P61574 105 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 LINC00483Q53H64 154 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 Q8NBF4 154 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 HSPB8Q9UJY1 196 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 MUC17Q685J3 4493 aa13□□□□□ -0.33
PTPN4-207ENST00000460162 J3QQQ9 107 aa12.99□□□□□ -0.33
PTPN4-207ENST00000460162 NMUP48645 174 aa12.99□□□□□ -0.33
PTPN4-207ENST00000460162 DAND5Q8N907 189 aa12.99□□□□□ -0.33
PTPN4-207ENST00000460162 DPM2O94777 84 aa12.98□□□□□ -0.33
PTPN4-207ENST00000460162 DDTP30046 118 aa12.98□□□□□ -0.33
PTPN4-207ENST00000460162 FAT4Q6V0I7 4981 aa12.98□□□□□ -0.33
PTPN4-207ENST00000460162 B5MCH6 92 aa12.97□□□□□ -0.33
PTPN4-207ENST00000460162 MIEN1Q9BRT3 115 aa12.97□□□□□ -0.33
PTPN4-207ENST00000460162 SPANXB1Q9NS25 103 aaPredicted RBP12.97□□□□□ -0.33
PTPN4-207ENST00000460162 SPINK1P00995 79 aa12.95□□□□□ -0.34
PTPN4-207ENST00000460162 IGKCP01834 107 aa12.94□□□□□ -0.34
PTPN4-207ENST00000460162 LGALS3P17931 250 aaKnown RBP12.94□□□□□ -0.34
PTPN4-207ENST00000460162 Q6ZRX8 168 aa12.94□□□□□ -0.34
PTPN4-207ENST00000460162 NDUFC2O95298 119 aa12.93□□□□□ -0.34
PTPN4-207ENST00000460162 FABP4P15090 132 aa12.93□□□□□ -0.34
PTPN4-207ENST00000460162 GAGE2AQ6NT46 116 aa12.93□□□□□ -0.34
PTPN4-207ENST00000460162 PMCHL2Q9BQD1 86 aa12.93□□□□□ -0.34
PTPN4-207ENST00000460162 LCE2AQ5TA79 106 aaPredicted RBP12.91□□□□□ -0.34
PTPN4-207ENST00000460162 ERC2-IT1O76042 136 aa12.9□□□□□ -0.34
PTPN4-207ENST00000460162 IGLV6-57P01721 117 aa12.9□□□□□ -0.34
PTPN4-207ENST00000460162 S100A7L2Q5SY68 101 aa12.9□□□□□ -0.34
PTPN4-207ENST00000460162 Q9BRP9 147 aa12.9□□□□□ -0.34
PTPN4-207ENST00000460162 RPS29P62273 56 aaKnown RBP12.89□□□□□ -0.35
PTPN4-207ENST00000460162 MOBPQ13875 183 aa12.89□□□□□ -0.35
PTPN4-207ENST00000460162 KRTAP13-3Q3SY46 172 aa12.88□□□□□ -0.35
PTPN4-207ENST00000460162 TRAV23DV6A0A075B6W5 121 aa12.87□□□□□ -0.35
PTPN4-207ENST00000460162 IGLV9-49A0A0B4J1Y8 123 aa12.87□□□□□ -0.35
PTPN4-207ENST00000460162 JOSD1Q15040 202 aaPredicted RBP12.86□□□□□ -0.35
PTPN4-207ENST00000460162 SSBP3-AS1Q7Z2R9 100 aa12.86□□□□□ -0.35
PTPN4-207ENST00000460162 COLCA2A8K830 154 aa12.85□□□□□ -0.35
PTPN4-207ENST00000460162 E9PLD3 99 aa12.85□□□□□ -0.35
PTPN4-207ENST00000460162 A0A0J9YXY3 114 aa12.84□□□□□ -0.35
PTPN4-207ENST00000460162 SOSTDC1Q6X4U4 206 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms