RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SMIM11BQ8TCY0 68 aa5.71□□□□□ -1.5
CD44-208ENST00000428726 DNAL4O96015 105 aa5.71□□□□□ -1.5
CD44-208ENST00000428726 KPRPQ5T749 579 aaPredicted RBP5.7□□□□□ -1.5
CD44-208ENST00000428726 CMYA5Q8N3K9 4069 aa5.7□□□□□ -1.5
CD44-208ENST00000428726 SHISA2Q6UWI4 295 aa5.7□□□□□ -1.5
CD44-208ENST00000428726 IBA57-AS1B1ANH7 110 aa5.69□□□□□ -1.5
CD44-208ENST00000428726 TRAV13-2A0A0B4J235 113 aa5.69□□□□□ -1.5
CD44-208ENST00000428726 LOC107984640A0A0U1RRK4 108 aa5.69□□□□□ -1.5
CD44-208ENST00000428726 MIFP14174 115 aa5.69□□□□□ -1.5
CD44-208ENST00000428726 RPL18AQ02543 176 aaKnown RBP5.69□□□□□ -1.5
CD44-208ENST00000428726 TNP2Q05952 138 aa5.69□□□□□ -1.5
CD44-208ENST00000428726 IGKV2D-24A0A075B6R9 120 aa5.68□□□□□ -1.5
CD44-208ENST00000428726 LINC01561Q8N1V8 128 aa5.68□□□□□ -1.5
CD44-208ENST00000428726 C22orf24Q9Y442 160 aa5.68□□□□□ -1.5
CD44-208ENST00000428726 HIST1H4AP62805 103 aaKnown RBP5.67□□□□□ -1.5
CD44-208ENST00000428726 SPAG11BQ08648 103 aa5.67□□□□□ -1.5
CD44-208ENST00000428726 ESRGQ1W209 222 aa5.67□□□□□ -1.5
CD44-208ENST00000428726 C9orf153Q5TBE3 101 aa5.67□□□□□ -1.5
CD44-208ENST00000428726 LYPD5Q6UWN5 251 aa5.67□□□□□ -1.5
CD44-208ENST00000428726 ENHOQ6UWT2 76 aa5.67□□□□□ -1.5
CD44-208ENST00000428726 FUSP35637 526 aaKnown RBP eCLIP5.66□□□□□ -1.5
CD44-208ENST00000428726 Q8IZM0 81 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 WIPF1O43516 503 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 TRACP01848 142 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 CASC10Q5T4H9 136 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 DEFB131BA0A096LNP1 70 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 GHRHP01286 108 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 RPL28P46779 137 aaKnown RBP5.66□□□□□ -1.5
CD44-208ENST00000428726 CYSTM1Q9H1C7 97 aa5.66□□□□□ -1.5
CD44-208ENST00000428726 CXCL5P42830 114 aa5.65□□□□□ -1.5
CD44-208ENST00000428726 CD164L2Q6UWJ8 174 aa5.65□□□□□ -1.5
CD44-208ENST00000428726 LINC00846Q9NV44 126 aa5.65□□□□□ -1.5
CD44-208ENST00000428726 C6orf99Q4VX62 202 aa5.64□□□□□ -1.51
CD44-208ENST00000428726 S100A7L2Q5SY68 101 aa5.64□□□□□ -1.51
CD44-208ENST00000428726 hADV29S1A0JD25 119 aa5.64□□□□□ -1.51
CD44-208ENST00000428726 C11orf45Q8TAV5 145 aa5.64□□□□□ -1.51
CD44-208ENST00000428726 KIAA0087Q14695 138 aa5.64□□□□□ -1.51
CD44-208ENST00000428726 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
CD44-208ENST00000428726 KRTAP3-2Q9BYR7 98 aa5.63□□□□□ -1.51
CD44-208ENST00000428726 LELP1Q5T871 98 aa5.63□□□□□ -1.51
CD44-208ENST00000428726 FAM240AA0A1B0GVK7 77 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 DNAH7Q8WXX0 4024 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 DNHD1Q96M86 4753 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 A0A1B0GX51 115 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 H0YGX0 51 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 ZNF561-AS1K7EIQ3 104 aa5.62□□□□□ -1.51
CD44-208ENST00000428726 COX17Q14061 63 aa5.61□□□□□ -1.51
CD44-208ENST00000428726 CAMK2N2Q96S95 79 aa5.61□□□□□ -1.51
CD44-208ENST00000428726 MDFIQ99750 246 aa5.61□□□□□ -1.51
CD44-208ENST00000428726 HUWE1Q7Z6Z7 4374 aaKnown RBP5.61□□□□□ -1.51
CD44-208ENST00000428726 TRAV23DV6A0A075B6W5 121 aa5.61□□□□□ -1.51
CD44-208ENST00000428726 LINC00643Q86TS7 51 aa5.61□□□□□ -1.51
CD44-208ENST00000428726 RPL37AP8A6NKH3 93 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 Q6ZRU5 148 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 DEFB105AQ8NG35 78 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 C6orf48Q9UBA6 75 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 LCE2DQ5TA82 110 aaPredicted RBP5.6□□□□□ -1.51
CD44-208ENST00000428726 Q6Q795 121 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 FAM19A1Q7Z5A9 133 aa5.6□□□□□ -1.51
CD44-208ENST00000428726 TRBV7-7A0A0K0K1E9 115 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 FAM168BA1KXE4 195 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 M0R2N4 97 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 NDUFC2O95298 119 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 ACYP1P07311 99 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 SCXQ7RTU7 201 aa5.59□□□□□ -1.51
CD44-208ENST00000428726 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.58□□□□□ -1.52
CD44-208ENST00000428726 PRR34Q9NV39 138 aa5.58□□□□□ -1.52
CD44-208ENST00000428726 TRBV10-3A0A0K0K1G6 114 aa5.58□□□□□ -1.52
CD44-208ENST00000428726 INAFM2P0DMQ5 153 aa5.58□□□□□ -1.52
CD44-208ENST00000428726 DNAH9Q9NYC9 4486 aa5.58□□□□□ -1.52
CD44-208ENST00000428726 K7EIL1 84 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 C3orf22Q8N5N4 141 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 MUC7Q8TAX7 377 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 DSCR8Q96T75 97 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 C1orf43Q9BWL3 253 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 IGKV2-24A0A0C4DH68 120 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 H3BNG1 76 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 LAMTOR3Q9UHA4 124 aa5.57□□□□□ -1.52
CD44-208ENST00000428726 TMEM126AQ9H061 195 aa5.56□□□□□ -1.52
CD44-208ENST00000428726 ORMDL1Q9P0S3 153 aa5.56□□□□□ -1.52
CD44-208ENST00000428726 A0A0G2JQZ4 141 aa5.56□□□□□ -1.52
CD44-208ENST00000428726 A0A1W2PNN7 141 aa5.56□□□□□ -1.52
CD44-208ENST00000428726 HAMPP81172 84 aa5.56□□□□□ -1.52
CD44-208ENST00000428726 EGFEM1PQ0D2K5 195 aa5.55□□□□□ -1.52
CD44-208ENST00000428726 Q6ZQY7 126 aa5.55□□□□□ -1.52
CD44-208ENST00000428726 MEGF8Q7Z7M0 2845 aa5.55□□□□□ -1.52
CD44-208ENST00000428726 Q6ZRP5 223 aa5.55□□□□□ -1.52
CD44-208ENST00000428726 LINC00588Q9Y4M8 146 aa5.55□□□□□ -1.52
CD44-208ENST00000428726 USP17L23D6RBM5 183 aa5.54□□□□□ -1.52
CD44-208ENST00000428726 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.54□□□□□ -1.52
CD44-208ENST00000428726 UQCRQO14949 82 aa5.53□□□□□ -1.52
CD44-208ENST00000428726 C15orf56Q8N910 161 aa5.53□□□□□ -1.52
CD44-208ENST00000428726 GVQW2A0A096LPI5 108 aaPredicted RBP5.53□□□□□ -1.52
CD44-208ENST00000428726 Q8N814 137 aa5.53□□□□□ -1.52
CD44-208ENST00000428726 PLECQ15149 4684 aaKnown RBP5.53□□□□□ -1.52
CD44-208ENST00000428726 COX7CP15954 63 aa5.53□□□□□ -1.52
CD44-208ENST00000428726 FAM19A5Q7Z5A7 132 aaPredicted RBP5.53□□□□□ -1.52
CD44-208ENST00000428726 SERTAD4-AS1Q5TG53 156 aa5.52□□□□□ -1.53
CD44-208ENST00000428726 OBSCN-AS1Q96MR7 158 aa5.52□□□□□ -1.53
CD44-208ENST00000428726 C20orf197Q8N268 126 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms