RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LINC00308Q8TCZ7 52 aa6.47□□□□□ -1.37
CD44-207ENST00000425428 CBY1Q9Y3M2 126 aa6.47□□□□□ -1.37
CD44-207ENST00000425428 ADAMTSL4-AS1Q5T5F5 129 aa6.46□□□□□ -1.37
CD44-207ENST00000425428 SPACA4Q8TDM5 124 aa6.46□□□□□ -1.37
CD44-207ENST00000425428 HSD52Q0P140 79 aa6.46□□□□□ -1.38
CD44-207ENST00000425428 FAM19A5Q7Z5A7 132 aaPredicted RBP6.46□□□□□ -1.38
CD44-207ENST00000425428 MUSTN1Q8IVN3 82 aa6.46□□□□□ -1.38
CD44-207ENST00000425428 PPDPFQ9H3Y8 114 aa6.46□□□□□ -1.38
CD44-207ENST00000425428 PLA2G2DQ9UNK4 145 aa6.46□□□□□ -1.38
CD44-207ENST00000425428 NDUFC2O95298 119 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 CHTF8P0CG12 524 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 KRTAP10-1P60331 282 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 S100A7L2Q5SY68 101 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 LCE2AQ5TA79 106 aaPredicted RBP6.45□□□□□ -1.38
CD44-207ENST00000425428 LITAFQ99732 161 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 TP73-AS1Q9UF72 201 aa6.45□□□□□ -1.38
CD44-207ENST00000425428 LOC107984156A0A0G2JMH3 177 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 C9orf129Q5T035 196 aaKnown RBP6.44□□□□□ -1.38
CD44-207ENST00000425428 ARL17AQ8IVW1 177 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 A0A087WYN8 130 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 M0QXV9 152 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 M0R143 59 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 UBE2BP63146 152 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 C7orf33Q8WU49 177 aa6.44□□□□□ -1.38
CD44-207ENST00000425428 M0R378 163 aa6.43□□□□□ -1.38
CD44-207ENST00000425428 C2orf91Q6ZV80 131 aa6.43□□□□□ -1.38
CD44-207ENST00000425428 CEND1Q8N111 149 aa6.43□□□□□ -1.38
CD44-207ENST00000425428 OR13C6PQ8NH95 151 aa6.43□□□□□ -1.38
CD44-207ENST00000425428 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.43□□□□□ -1.38
CD44-207ENST00000425428 HECTD4Q9Y4D8 3996 aa6.42□□□□□ -1.38
CD44-207ENST00000425428 TRAV13-2A0A0B4J235 113 aa6.42□□□□□ -1.38
CD44-207ENST00000425428 TRBV10-2A0A0K0K1G8 114 aa6.42□□□□□ -1.38
CD44-207ENST00000425428 MRPL55Q7Z7F7 128 aaKnown RBP6.42□□□□□ -1.38
CD44-207ENST00000425428 RAB37Q96AX2 223 aa6.42□□□□□ -1.38
CD44-207ENST00000425428 PLAC8Q9NZF1 115 aa6.42□□□□□ -1.38
CD44-207ENST00000425428 Q6ZSA8 131 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 C22orf24Q9Y442 160 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 FAT2Q9NYQ8 4349 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 IGLV5-37A0A075B6J1 123 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 FAM168BA1KXE4 195 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 A6NDN8 102 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 NCR3O14931 201 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 DDTP30046 118 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 TMEM126AQ9H061 195 aa6.41□□□□□ -1.38
CD44-207ENST00000425428 A4D1N5 150 aa6.4□□□□□ -1.38
CD44-207ENST00000425428 VPREB1P12018 145 aa6.4□□□□□ -1.38
CD44-207ENST00000425428 HINT1P49773 126 aaPredicted RBP6.4□□□□□ -1.38
CD44-207ENST00000425428 CTAG1AP78358 180 aa6.4□□□□□ -1.38
CD44-207ENST00000425428 RYR3Q15413 4870 aa6.4□□□□□ -1.39
CD44-207ENST00000425428 A0A1W2PNN7 141 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 SERTAD4-AS1Q5TG53 156 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 SOSTDC1Q6X4U4 206 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 SCXQ7RTU7 201 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 CIRBP-AS1Q8TBR5 109 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 FAM30AQ9NZY2 134 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 GAGE10A6NGK3 116 aa6.39□□□□□ -1.39
CD44-207ENST00000425428 PKD1P98161 4303 aa6.38□□□□□ -1.39
CD44-207ENST00000425428 PANO1I0J062 215 aa6.38□□□□□ -1.39
CD44-207ENST00000425428 PCP4L1A6NKN8 68 aa6.37□□□□□ -1.39
CD44-207ENST00000425428 CDK2AP2O75956 126 aa6.37□□□□□ -1.39
CD44-207ENST00000425428 Q1RN00 199 aa6.37□□□□□ -1.39
CD44-207ENST00000425428 PHF5AQ7RTV0 110 aaKnown RBP6.37□□□□□ -1.39
CD44-207ENST00000425428 LINC00167Q96N53 147 aa6.37□□□□□ -1.39
CD44-207ENST00000425428 RPL37AP8A6NKH3 93 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 PRR3P79522 188 aaKnown RBP6.36□□□□□ -1.39
CD44-207ENST00000425428 NHP2Q9NX24 153 aaKnown RBP6.36□□□□□ -1.39
CD44-207ENST00000425428 IGKV2-28A0A075B6P5 120 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 A0A0B4J2C4 111 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 FAM229AH3BQW9 127 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 IGKV2D-28P01615 120 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 BATFQ16520 125 aa6.36□□□□□ -1.39
CD44-207ENST00000425428 PRYO14603 147 aa6.35□□□□□ -1.39
CD44-207ENST00000425428 EIF4EBP3O60516 100 aaPredicted RBP6.35□□□□□ -1.39
CD44-207ENST00000425428 VAMP3Q15836 100 aa6.35□□□□□ -1.39
CD44-207ENST00000425428 BVES-AS1Q5T3Y7 98 aa6.35□□□□□ -1.39
CD44-207ENST00000425428 PRO1854Q9UHT4 67 aa6.35□□□□□ -1.39
CD44-207ENST00000425428 DNAH11Q96DT5 4516 aa6.35□□□□□ -1.39
CD44-207ENST00000425428 TRAV23DV6A0A075B6W5 121 aa6.34□□□□□ -1.39
CD44-207ENST00000425428 TRBV10-3A0A0K0K1G6 114 aa6.34□□□□□ -1.39
CD44-207ENST00000425428 EPM2AB3EWF7 344 aa6.34□□□□□ -1.39
CD44-207ENST00000425428 SNCGO76070 127 aa6.34□□□□□ -1.39
CD44-207ENST00000425428 RPL13AP40429 203 aaKnown RBP6.34□□□□□ -1.39
CD44-207ENST00000425428 FXYD2P54710 66 aa6.34□□□□□ -1.39
CD44-207ENST00000425428 IGLV1-50A0A075B6I6 118 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 ETDCA0A1B0GVM5 59 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 CFC1BP0CG36 223 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 CFC1P0CG37 223 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 HAMPP81172 84 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 REG3GQ6UW15 175 aa6.34□□□□□ -1.4
CD44-207ENST00000425428 H7C2G1 150 aa6.33□□□□□ -1.4
CD44-207ENST00000425428 IGLV6-57P01721 117 aa6.33□□□□□ -1.4
CD44-207ENST00000425428 PLA2G1BP04054 148 aaKnown RBP6.33□□□□□ -1.4
CD44-207ENST00000425428 LINC00337Q8N6G1 96 aa6.33□□□□□ -1.4
CD44-207ENST00000425428 DIRC1Q969H9 104 aa6.33□□□□□ -1.4
CD44-207ENST00000425428 PKHD1P08F94 4074 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 COX6CP09669 75 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 UBE2AP49459 152 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 PSMB2P49721 201 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 XGP55808 180 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 KCNQ1DNQ9H478 68 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms