RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 FAM19A1Q7Z5A9 133 aa6.65□□□□□ -1.35
SS18-203ENST00000415083 HECTD1Q9ULT8 2610 aa6.65□□□□□ -1.35
SS18-203ENST00000415083 NDUFC2O95298 119 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 NOTCH2Q04721 2471 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 ATRQ13535 2644 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 CCKP06307 115 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 CRYGAP11844 174 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 Q6JHZ5 121 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 ANGP03950 147 aaKnown RBP6.64□□□□□ -1.35
SS18-203ENST00000415083 UPK3BQ9BT76 320 aa6.64□□□□□ -1.35
SS18-203ENST00000415083 SMIM9A6NGZ8 99 aa6.63□□□□□ -1.35
SS18-203ENST00000415083 ENHOQ6UWT2 76 aa6.63□□□□□ -1.35
SS18-203ENST00000415083 C6orf99Q4VX62 202 aa6.63□□□□□ -1.35
SS18-203ENST00000415083 LYRM9A8MSI8 78 aa6.63□□□□□ -1.35
SS18-203ENST00000415083 J3KT08 172 aa6.63□□□□□ -1.35
SS18-203ENST00000415083 DNAH10Q8IVF4 4471 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 COX17Q14061 63 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 SERP2Q8N6R1 65 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 LYPD5Q6UWN5 251 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 LINC00575Q6W349 94 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 PRR34Q9NV39 138 aa6.62□□□□□ -1.35
SS18-203ENST00000415083 CYSRT1A8MQ03 144 aa6.6□□□□□ -1.35
SS18-203ENST00000415083 OXTP01178 125 aa6.6□□□□□ -1.35
SS18-203ENST00000415083 IGLV6-57P01721 117 aa6.6□□□□□ -1.35
SS18-203ENST00000415083 FBN1P35555 2871 aaKnown RBP6.6□□□□□ -1.35
SS18-203ENST00000415083 KRTAP26-1Q6PEX3 210 aa6.6□□□□□ -1.35
SS18-203ENST00000415083 GHRHP01286 108 aa6.6□□□□□ -1.35
SS18-203ENST00000415083 A0A0J9YWU9 116 aa6.59□□□□□ -1.35
SS18-203ENST00000415083 IGHV4-30-4P0DP06 118 aa6.59□□□□□ -1.35
SS18-203ENST00000415083 C6orf48Q9UBA6 75 aa6.59□□□□□ -1.35
SS18-203ENST00000415083 DPH3Q96FX2 82 aa6.59□□□□□ -1.35
SS18-203ENST00000415083 Q6ZQT0 140 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 CSMD3Q7Z407 3707 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 DAD1P61803 113 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 SPAG11BQ08648 103 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 S100A7L2Q5SY68 101 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 KLK12Q9UKR0 248 aa6.58□□□□□ -1.36
SS18-203ENST00000415083 INAFM1C9JVW0 142 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 C20orf197Q8N268 126 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 DNAH9Q9NYC9 4486 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 LAMTOR3Q9UHA4 124 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 TMEM256-PLSCR3K7ERE1 68 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 LELP1Q5T871 98 aa6.57□□□□□ -1.36
SS18-203ENST00000415083 C9orf66Q5T8R8 295 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 HUWE1Q7Z6Z7 4374 aaKnown RBP6.56□□□□□ -1.36
SS18-203ENST00000415083 HTN3P15516 51 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 HAMPP81172 84 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 XAGE1AQ9HD64 81 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 TRBV10-3A0A0K0K1G6 114 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 JMJD7-PLA2G4BH0Y9G9 81 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 C4orf26Q17RF5 130 aa6.56□□□□□ -1.36
SS18-203ENST00000415083 WFDC10BQ8IUB3 73 aa6.55□□□□□ -1.36
SS18-203ENST00000415083 UBL5Q9BZL1 73 aa6.55□□□□□ -1.36
SS18-203ENST00000415083 TMEM258P61165 79 aa6.54□□□□□ -1.36
SS18-203ENST00000415083 RETNQ9HD89 108 aa6.54□□□□□ -1.36
SS18-203ENST00000415083 GVQW2A0A096LPI5 108 aaPredicted RBP6.54□□□□□ -1.36
SS18-203ENST00000415083 SCXQ7RTU7 201 aa6.54□□□□□ -1.36
SS18-203ENST00000415083 DNAH7Q8WXX0 4024 aa6.54□□□□□ -1.36
SS18-203ENST00000415083 MIFP14174 115 aa6.53□□□□□ -1.36
SS18-203ENST00000415083 RBM3P98179 157 aaKnown RBP6.53□□□□□ -1.36
SS18-203ENST00000415083 LOC110117498A0A087WWA1 95 aa6.53□□□□□ -1.36
SS18-203ENST00000415083 Q6ZQY7 126 aa6.53□□□□□ -1.36
SS18-203ENST00000415083 C15orf56Q8N910 161 aa6.53□□□□□ -1.36
SS18-203ENST00000415083 VPREB1P12018 145 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 APOC4P55056 127 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 HRCT1Q6UXD1 115 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 TRAV10A0A0B4J240 114 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 RPS28P62857 69 aaKnown RBP6.52□□□□□ -1.37
SS18-203ENST00000415083 HIGD2BQ4VC39 106 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 SNURFQ9Y675 71 aa6.52□□□□□ -1.37
SS18-203ENST00000415083 KRTAP10-11P60412 298 aa6.51□□□□□ -1.37
SS18-203ENST00000415083 J3QKU1 62 aa6.51□□□□□ -1.37
SS18-203ENST00000415083 ZNF561-AS1K7EIQ3 104 aa6.51□□□□□ -1.37
SS18-203ENST00000415083 SPART-AS1P0CW21 52 aa6.51□□□□□ -1.37
SS18-203ENST00000415083 C5orf47Q569G3 176 aa6.51□□□□□ -1.37
SS18-203ENST00000415083 WIPF1O43516 503 aa6.5□□□□□ -1.37
SS18-203ENST00000415083 LINC01547P58512 204 aaPredicted RBP6.5□□□□□ -1.37
SS18-203ENST00000415083 Q6ZRU5 148 aa6.5□□□□□ -1.37
SS18-203ENST00000415083 Q6ZVQ6 151 aa6.49□□□□□ -1.37
SS18-203ENST00000415083 TRBV7-4A0A0J9YYF1 115 aa6.49□□□□□ -1.37
SS18-203ENST00000415083 ELOF1P60002 83 aaKnown RBP6.49□□□□□ -1.37
SS18-203ENST00000415083 ZNF73O43830 326 aaPredicted RBP6.48□□□□□ -1.37
SS18-203ENST00000415083 Q6ZRP5 223 aa6.48□□□□□ -1.37
SS18-203ENST00000415083 RMI2Q96E14 147 aa6.48□□□□□ -1.37
SS18-203ENST00000415083 ESRGQ1W209 222 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 ATP5EP2Q5VTU8 51 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 Q6ZTC4 211 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 MUC7Q8TAX7 377 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 FLNBO75369 2602 aaKnown RBP6.47□□□□□ -1.37
SS18-203ENST00000415083 KPRPQ5T749 579 aaPredicted RBP6.47□□□□□ -1.37
SS18-203ENST00000415083 Q5XG85 94 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 OXLD1Q5BKU9 147 aa6.47□□□□□ -1.37
SS18-203ENST00000415083 COL7A1Q02388 2944 aa6.46□□□□□ -1.37
SS18-203ENST00000415083 LINC00528Q8N1L1 170 aa6.46□□□□□ -1.37
SS18-203ENST00000415083 Q8N9L7 120 aa6.46□□□□□ -1.38
SS18-203ENST00000415083 TRBV7-6A0A0J9YX20 115 aa6.45□□□□□ -1.38
SS18-203ENST00000415083 FAM236DA0A1B0GTK5 79 aa6.45□□□□□ -1.38
SS18-203ENST00000415083 FAM236CP0DP71 79 aa6.45□□□□□ -1.38
SS18-203ENST00000415083 DIRC1Q969H9 104 aa6.45□□□□□ -1.38
SS18-203ENST00000415083 STAB1Q9NY15 2570 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms