RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 KRTAP13-2Q52LG2 175 aa8.63□□□□□ -1.03
CBX3-203ENST00000409747 TMEM238C9JI98 176 aa8.63□□□□□ -1.03
CBX3-203ENST00000409747 LINC00304Q8N9R0 145 aa8.63□□□□□ -1.03
CBX3-203ENST00000409747 M0R378 163 aa8.62□□□□□ -1.03
CBX3-203ENST00000409747 LINC00158P58513 81 aa8.62□□□□□ -1.03
CBX3-203ENST00000409747 CHCHD1Q96BP2 118 aaKnown RBP8.62□□□□□ -1.03
CBX3-203ENST00000409747 TRAV12-1A0A0B4J245 112 aa8.61□□□□□ -1.03
CBX3-203ENST00000409747 CTAG1AP78358 180 aa8.61□□□□□ -1.03
CBX3-203ENST00000409747 A0A0U1RQV1 116 aa8.6□□□□□ -1.03
CBX3-203ENST00000409747 TMEM223A0PJW6 202 aa8.6□□□□□ -1.03
CBX3-203ENST00000409747 CBLN2Q8IUK8 224 aa8.6□□□□□ -1.03
CBX3-203ENST00000409747 ATP6V1G1O75348 118 aa8.59□□□□□ -1.03
CBX3-203ENST00000409747 Q8NDZ9 215 aa8.59□□□□□ -1.03
CBX3-203ENST00000409747 IFI27L1Q96BM0 104 aa8.59□□□□□ -1.03
CBX3-203ENST00000409747 PLEKHB2Q96CS7 222 aa8.58□□□□□ -1.04
CBX3-203ENST00000409747 MUC2Q02817 5179 aa8.58□□□□□ -1.04
CBX3-203ENST00000409747 HIGD2AQ9BW72 106 aa8.57□□□□□ -1.04
CBX3-203ENST00000409747 A0A0U1RRA0 63 aa8.56□□□□□ -1.04
CBX3-203ENST00000409747 LINC00587B1AMM8 73 aa8.56□□□□□ -1.04
CBX3-203ENST00000409747 HERV-K104P63124 156 aa8.56□□□□□ -1.04
CBX3-203ENST00000409747 MEIG1Q5JSS6 88 aa8.56□□□□□ -1.04
CBX3-203ENST00000409747 ZNF706Q9Y5V0 76 aaPredicted RBP8.56□□□□□ -1.04
CBX3-203ENST00000409747 PRYO14603 147 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 HSBP1O75506 76 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 SMIM13P0DJ93 91 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 YPEL4Q96NS1 127 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 RETNLBQ9BQ08 111 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 BOD1L2Q8IYS8 172 aa8.54□□□□□ -1.04
CBX3-203ENST00000409747 SPAG11AQ6PDA7 123 aa8.53□□□□□ -1.04
CBX3-203ENST00000409747 MAP1LC3CQ9BXW4 147 aa8.53□□□□□ -1.04
CBX3-203ENST00000409747 TPRXLQ17RH7 258 aa8.52□□□□□ -1.05
CBX3-203ENST00000409747 MIR7-3HGQ8N6C7 128 aa8.52□□□□□ -1.05
CBX3-203ENST00000409747 SPRR4Q96PI1 79 aa8.52□□□□□ -1.05
CBX3-203ENST00000409747 MYMXA0A1B0GTQ4 84 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 S100A12P80511 92 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 C3orf22Q8N5N4 141 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 LINC00337Q8N6G1 96 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 NDUFA12Q9UI09 145 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 NCR3O14931 201 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 CDIP1Q9H305 208 aa8.51□□□□□ -1.05
CBX3-203ENST00000409747 IGLV7-46A0A075B6I9 117 aa8.5□□□□□ -1.05
CBX3-203ENST00000409747 KCNQ1DNQ9H478 68 aa8.5□□□□□ -1.05
CBX3-203ENST00000409747 ETDCA0A1B0GVM5 59 aa8.49□□□□□ -1.05
CBX3-203ENST00000409747 H0Y8G0 127 aa8.49□□□□□ -1.05
CBX3-203ENST00000409747 SPRR1AP35321 89 aa8.49□□□□□ -1.05
CBX3-203ENST00000409747 FAM19A2Q8N3H0 131 aa8.49□□□□□ -1.05
CBX3-203ENST00000409747 C4orf48Q5BLP8 95 aa8.49□□□□□ -1.05
CBX3-203ENST00000409747 LEPROTL1O95214 131 aa8.48□□□□□ -1.05
CBX3-203ENST00000409747 PLNP26678 52 aa8.48□□□□□ -1.05
CBX3-203ENST00000409747 TRBV10-3A0A0K0K1G6 114 aa8.46□□□□□ -1.06
CBX3-203ENST00000409747 KRTAP4-16G5E9R7 235 aaPredicted RBP8.46□□□□□ -1.06
CBX3-203ENST00000409747 LEPROTO15243 131 aa8.46□□□□□ -1.06
CBX3-203ENST00000409747 HERVK_113P61574 105 aa8.46□□□□□ -1.06
CBX3-203ENST00000409747 HSPB8Q9UJY1 196 aa8.46□□□□□ -1.06
CBX3-203ENST00000409747 TRGC2P03986 189 aa8.45□□□□□ -1.06
CBX3-203ENST00000409747 FP248Q71RG6 208 aaPredicted RBP8.45□□□□□ -1.06
CBX3-203ENST00000409747 SMCR5Q8TEV8 140 aa8.45□□□□□ -1.06
CBX3-203ENST00000409747 PPDPFQ9H3Y8 114 aa8.45□□□□□ -1.06
CBX3-203ENST00000409747 LOC107984156A0A0G2JMH3 177 aa8.44□□□□□ -1.06
CBX3-203ENST00000409747 TRBV10-2A0A0K0K1G8 114 aa8.44□□□□□ -1.06
CBX3-203ENST00000409747 NMUP48645 174 aa8.44□□□□□ -1.06
CBX3-203ENST00000409747 ARL17AQ8IVW1 177 aa8.44□□□□□ -1.06
CBX3-203ENST00000409747 MIEN1Q9BRT3 115 aa8.44□□□□□ -1.06
CBX3-203ENST00000409747 SERF1AO75920 110 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 TSPEAR-AS2P59090 65 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 Q8NBF4 154 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 J3QQQ9 107 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 DPM2O94777 84 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 DDTP30046 118 aa8.43□□□□□ -1.06
CBX3-203ENST00000409747 SPINK1P00995 79 aa8.42□□□□□ -1.06
CBX3-203ENST00000409747 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
CBX3-203ENST00000409747 DAND5Q8N907 189 aa8.42□□□□□ -1.06
CBX3-203ENST00000409747 SPANXB1Q9NS25 103 aaPredicted RBP8.42□□□□□ -1.06
CBX3-203ENST00000409747 MUC17Q685J3 4493 aa8.42□□□□□ -1.06
CBX3-203ENST00000409747 B5MCH6 92 aa8.41□□□□□ -1.06
CBX3-203ENST00000409747 LGALS3P17931 250 aaKnown RBP8.41□□□□□ -1.06
CBX3-203ENST00000409747 IGKCP01834 107 aa8.4□□□□□ -1.06
CBX3-203ENST00000409747 LINC00310P59036 64 aa8.4□□□□□ -1.06
CBX3-203ENST00000409747 KRTAP3-3Q9BYR6 98 aa8.4□□□□□ -1.07
CBX3-203ENST00000409747 KRTAP3-2Q9BYR7 98 aa8.4□□□□□ -1.07
CBX3-203ENST00000409747 FAT4Q6V0I7 4981 aa8.39□□□□□ -1.07
CBX3-203ENST00000409747 NDUFC2O95298 119 aa8.39□□□□□ -1.07
CBX3-203ENST00000409747 FABP4P15090 132 aa8.39□□□□□ -1.07
CBX3-203ENST00000409747 S100A7L2Q5SY68 101 aa8.39□□□□□ -1.07
CBX3-203ENST00000409747 GAGE2AQ6NT46 116 aa8.39□□□□□ -1.07
CBX3-203ENST00000409747 Q6ZRX8 168 aa8.38□□□□□ -1.07
CBX3-203ENST00000409747 JOSD1Q15040 202 aaPredicted RBP8.37□□□□□ -1.07
CBX3-203ENST00000409747 PMCHL2Q9BQD1 86 aa8.37□□□□□ -1.07
CBX3-203ENST00000409747 IGLV9-49A0A0B4J1Y8 123 aa8.36□□□□□ -1.07
CBX3-203ENST00000409747 IGLV6-57P01721 117 aa8.36□□□□□ -1.07
CBX3-203ENST00000409747 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
CBX3-203ENST00000409747 MOBPQ13875 183 aa8.36□□□□□ -1.07
CBX3-203ENST00000409747 SSBP3-AS1Q7Z2R9 100 aa8.36□□□□□ -1.07
CBX3-203ENST00000409747 TRAV23DV6A0A075B6W5 121 aa8.35□□□□□ -1.07
CBX3-203ENST00000409747 ERC2-IT1O76042 136 aa8.35□□□□□ -1.07
CBX3-203ENST00000409747 Q9BRP9 147 aa8.35□□□□□ -1.07
CBX3-203ENST00000409747 CBY1Q9Y3M2 126 aa8.35□□□□□ -1.07
CBX3-203ENST00000409747 KRTAP13-3Q3SY46 172 aa8.34□□□□□ -1.07
CBX3-203ENST00000409747 LCE2AQ5TA79 106 aaPredicted RBP8.34□□□□□ -1.07
CBX3-203ENST00000409747 E9PLD3 99 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms