RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 NDUFC2O95298 119 aa13.73□□□□□ -0.21
TPM1-208ENST00000404484 TSPAN13O95857 204 aa13.73□□□□□ -0.21
TPM1-208ENST00000404484 A0A1W2PPM0 123 aa13.72□□□□□ -0.21
TPM1-208ENST00000404484 FABP2P12104 132 aa13.72□□□□□ -0.21
TPM1-208ENST00000404484 VAMP3Q15836 100 aa13.71□□□□□ -0.21
TPM1-208ENST00000404484 Q1RN00 199 aa13.71□□□□□ -0.21
TPM1-208ENST00000404484 LYRM7Q5U5X0 104 aa13.71□□□□□ -0.21
TPM1-208ENST00000404484 Q6ZRN7 208 aaPredicted RBP13.71□□□□□ -0.21
TPM1-208ENST00000404484 DNAH17Q9UFH2 4485 aa13.71□□□□□ -0.21
TPM1-208ENST00000404484 BIRC6Q9NR09 4857 aa13.71□□□□□ -0.21
TPM1-208ENST00000404484 RPL13AP40429 203 aaKnown RBP13.71□□□□□ -0.22
TPM1-208ENST00000404484 NAA38Q9BRA0 125 aaKnown RBP13.71□□□□□ -0.22
TPM1-208ENST00000404484 TLX1NBP0CAT3 122 aa13.7□□□□□ -0.22
TPM1-208ENST00000404484 WFDC2Q14508 124 aa13.69□□□□□ -0.22
TPM1-208ENST00000404484 C1orf134Q5TEV5 83 aa13.69□□□□□ -0.22
TPM1-208ENST00000404484 H7C2G1 150 aa13.68□□□□□ -0.22
TPM1-208ENST00000404484 SLPIP03973 132 aa13.68□□□□□ -0.22
TPM1-208ENST00000404484 CNBPP62633 177 aaKnown RBP13.68□□□□□ -0.22
TPM1-208ENST00000404484 LINC00336Q6ZUF6 198 aa13.68□□□□□ -0.22
TPM1-208ENST00000404484 IGKV2-28A0A075B6P5 120 aa13.66□□□□□ -0.22
TPM1-208ENST00000404484 IGKV2D-28P01615 120 aa13.66□□□□□ -0.22
TPM1-208ENST00000404484 PSMB2P49721 201 aa13.66□□□□□ -0.22
TPM1-208ENST00000404484 HECTD4Q9Y4D8 3996 aa13.66□□□□□ -0.22
TPM1-208ENST00000404484 LRCOL1A6NCL2 159 aa13.65□□□□□ -0.22
TPM1-208ENST00000404484 GTF2H5Q6ZYL4 71 aa13.65□□□□□ -0.22
TPM1-208ENST00000404484 LINC00337Q8N6G1 96 aa13.64□□□□□ -0.23
TPM1-208ENST00000404484 XAGE1AQ9HD64 81 aa13.64□□□□□ -0.23
TPM1-208ENST00000404484 RPL18AQ02543 176 aaKnown RBP13.63□□□□□ -0.23
TPM1-208ENST00000404484 Q6ZRP5 223 aa13.63□□□□□ -0.23
TPM1-208ENST00000404484 SPCS1Q9Y6A9 102 aa13.63□□□□□ -0.23
TPM1-208ENST00000404484 LOC107984640A0A0U1RRK4 108 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 GAGE10A6NGK3 116 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 GAGE2EQ4V326 116 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 GAGE2DQ9UEU5 116 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 PKIGQ9Y2B9 76 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 K7EP34 96 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 COX6CP09669 75 aa13.62□□□□□ -0.23
TPM1-208ENST00000404484 TRBV10-2A0A0K0K1G8 114 aa13.61□□□□□ -0.23
TPM1-208ENST00000404484 SCGB1C2P0DMR2 95 aa13.61□□□□□ -0.23
TPM1-208ENST00000404484 OR13C6PQ8NH95 151 aa13.61□□□□□ -0.23
TPM1-208ENST00000404484 A0A1B0GVY2 172 aa13.6□□□□□ -0.23
TPM1-208ENST00000404484 UBE2V1Q13404 147 aa13.59□□□□□ -0.23
TPM1-208ENST00000404484 PKHD1P08F94 4074 aa13.59□□□□□ -0.23
TPM1-208ENST00000404484 TMEM126AQ9H061 195 aa13.58□□□□□ -0.23
TPM1-208ENST00000404484 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.58□□□□□ -0.24
TPM1-208ENST00000404484 TRBV20-1A0A075B6N2 111 aa13.58□□□□□ -0.24
TPM1-208ENST00000404484 TRIAP1O43715 76 aa13.58□□□□□ -0.24
TPM1-208ENST00000404484 PKD1P98161 4303 aa13.57□□□□□ -0.24
TPM1-208ENST00000404484 A0A087WTM6 91 aa13.57□□□□□ -0.24
TPM1-208ENST00000404484 NCR3O14931 201 aa13.57□□□□□ -0.24
TPM1-208ENST00000404484 TNP2Q05952 138 aa13.57□□□□□ -0.24
TPM1-208ENST00000404484 Q8N814 137 aa13.57□□□□□ -0.24
TPM1-208ENST00000404484 S100A7L2Q5SY68 101 aa13.56□□□□□ -0.24
TPM1-208ENST00000404484 Q8NDZ9 215 aa13.56□□□□□ -0.24
TPM1-208ENST00000404484 VPREB1P12018 145 aa13.55□□□□□ -0.24
TPM1-208ENST00000404484 RPL28P46779 137 aaKnown RBP13.55□□□□□ -0.24
TPM1-208ENST00000404484 PRR3P79522 188 aaKnown RBP13.55□□□□□ -0.24
TPM1-208ENST00000404484 C9orf129Q5T035 196 aaKnown RBP13.55□□□□□ -0.24
TPM1-208ENST00000404484 PLA2G2DQ9UNK4 145 aa13.55□□□□□ -0.24
TPM1-208ENST00000404484 GAGE2BQ13066 116 aa13.54□□□□□ -0.24
TPM1-208ENST00000404484 C9orf163Q8N9P6 203 aa13.53□□□□□ -0.24
TPM1-208ENST00000404484 SMIM11BQ8TCY0 68 aa13.53□□□□□ -0.24
TPM1-208ENST00000404484 M0R378 163 aa13.52□□□□□ -0.25
TPM1-208ENST00000404484 C16orf90A8MZG2 172 aa13.51□□□□□ -0.25
TPM1-208ENST00000404484 CBY1Q9Y3M2 126 aa13.51□□□□□ -0.25
TPM1-208ENST00000404484 DNAH11Q96DT5 4516 aa13.51□□□□□ -0.25
TPM1-208ENST00000404484 NKAPP1Q8N9T2 125 aa13.5□□□□□ -0.25
TPM1-208ENST00000404484 TCL1BO95988 128 aa13.49□□□□□ -0.25
TPM1-208ENST00000404484 IGLV6-57P01721 117 aa13.49□□□□□ -0.25
TPM1-208ENST00000404484 ATXN8Q156A1 80 aa13.49□□□□□ -0.25
TPM1-208ENST00000404484 IGLV5-37A0A075B6J1 123 aa13.48□□□□□ -0.25
TPM1-208ENST00000404484 H0YGX0 51 aa13.46□□□□□ -0.25
TPM1-208ENST00000404484 H3BMG7 143 aa13.46□□□□□ -0.25
TPM1-208ENST00000404484 DYNC1H1Q14204 4646 aaKnown RBP13.46□□□□□ -0.26
TPM1-208ENST00000404484 A0A096LNI7 61 aa13.45□□□□□ -0.26
TPM1-208ENST00000404484 TRBV10-3A0A0K0K1G6 114 aa13.45□□□□□ -0.26
TPM1-208ENST00000404484 SERTAD4-AS1Q5TG53 156 aa13.45□□□□□ -0.26
TPM1-208ENST00000404484 LINC00474Q9P2X8 69 aa13.45□□□□□ -0.26
TPM1-208ENST00000404484 LST1O00453 97 aa13.43□□□□□ -0.26
TPM1-208ENST00000404484 TRAV23DV6A0A075B6W5 121 aa13.42□□□□□ -0.26
TPM1-208ENST00000404484 IGKV2-24A0A0C4DH68 120 aa13.42□□□□□ -0.26
TPM1-208ENST00000404484 CLEC2BQ92478 149 aa13.42□□□□□ -0.26
TPM1-208ENST00000404484 SDIM1Q6ZPB5 146 aa13.41□□□□□ -0.26
TPM1-208ENST00000404484 FAM168BA1KXE4 195 aa13.4□□□□□ -0.26
TPM1-208ENST00000404484 KIAA1109Q2LD37 5005 aa13.39□□□□□ -0.27
TPM1-208ENST00000404484 F8W1H4 67 aa13.39□□□□□ -0.27
TPM1-208ENST00000404484 C6orf99Q4VX62 202 aa13.39□□□□□ -0.27
TPM1-208ENST00000404484 FAM19A5Q7Z5A7 132 aaPredicted RBP13.39□□□□□ -0.27
TPM1-208ENST00000404484 C7orf33Q8WU49 177 aa13.39□□□□□ -0.27
TPM1-208ENST00000404484 LINC01620Q4KN68 170 aa13.38□□□□□ -0.27
TPM1-208ENST00000404484 DIRC1Q969H9 104 aa13.38□□□□□ -0.27
TPM1-208ENST00000404484 C22orf24Q9Y442 160 aa13.38□□□□□ -0.27
TPM1-208ENST00000404484 IGLV5-52A0A0A0MRZ9 124 aa13.37□□□□□ -0.27
TPM1-208ENST00000404484 TRACP01848 142 aa13.37□□□□□ -0.27
TPM1-208ENST00000404484 KRTAP10-2P60368 255 aa13.37□□□□□ -0.27
TPM1-208ENST00000404484 MRPL55Q7Z7F7 128 aaKnown RBP13.37□□□□□ -0.27
TPM1-208ENST00000404484 ZNF73O43830 326 aaPredicted RBP13.36□□□□□ -0.27
TPM1-208ENST00000404484 SNCGO76070 127 aa13.36□□□□□ -0.27
TPM1-208ENST00000404484 LRP1BQ9NZR2 4599 aa13.35□□□□□ -0.27
TPM1-208ENST00000404484 TRBV7-6A0A0J9YX20 115 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms