RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-202ENST00000394943 A0A1W2PNN7 141 aa4.37□□□□□ -1.71
LIMA1-202ENST00000394943 KRTAP13-1Q8IUC0 172 aa4.37□□□□□ -1.71
LIMA1-202ENST00000394943 SPRR1AP35321 89 aa4.37□□□□□ -1.71
LIMA1-202ENST00000394943 COX8AP10176 69 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 PYY3Q5JQD4 70 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 SND1-IT1Q9HBX3 110 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 SRSF9Q13242 221 aaKnown RBP eCLIP4.36□□□□□ -1.71
LIMA1-202ENST00000394943 Q8NDZ9 215 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 TNXBP22105 4242 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 A0A087WYN8 130 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 IFITM1P13164 125 aa4.36□□□□□ -1.71
LIMA1-202ENST00000394943 KRTAP4-16G5E9R7 235 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-202ENST00000394943 H0Y9J4 135 aa4.35□□□□□ -1.71
LIMA1-202ENST00000394943 PMCHL2Q9BQD1 86 aa4.35□□□□□ -1.71
LIMA1-202ENST00000394943 STPG4Q8N801 248 aa4.35□□□□□ -1.71
LIMA1-202ENST00000394943 C9orf116Q5BN46 136 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-202ENST00000394943 LGALS3P17931 250 aaKnown RBP4.34□□□□□ -1.71
LIMA1-202ENST00000394943 SERTAD4-AS1Q5TG53 156 aa4.34□□□□□ -1.71
LIMA1-202ENST00000394943 PRR3P79522 188 aaKnown RBP4.34□□□□□ -1.71
LIMA1-202ENST00000394943 ADAMTSL4-AS1Q5T5F5 129 aa4.34□□□□□ -1.71
LIMA1-202ENST00000394943 ABCA13Q86UQ4 5058 aa4.34□□□□□ -1.71
LIMA1-202ENST00000394943 IGLV6-57P01721 117 aa4.34□□□□□ -1.72
LIMA1-202ENST00000394943 SMIM6P0DI80 62 aa4.34□□□□□ -1.72
LIMA1-202ENST00000394943 SOSTDC1Q6X4U4 206 aa4.34□□□□□ -1.72
LIMA1-202ENST00000394943 IGLV1-50A0A075B6I6 118 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 FUSP35637 526 aaKnown RBP eCLIP4.33□□□□□ -1.72
LIMA1-202ENST00000394943 TAL2Q16559 108 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 KCNQ1DNQ9H478 68 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 CHTF8P0CG12 524 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 VAMP3Q15836 100 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 C2orf91Q6ZV80 131 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 LBHQ53QV2 105 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-202ENST00000394943 KRTAP11-1Q8IUC1 163 aa4.33□□□□□ -1.72
LIMA1-202ENST00000394943 SMIM13P0DJ93 91 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 DDTP30046 118 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 MAJINQ3KP22 176 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 MEIG1Q5JSS6 88 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 C14orf144Q96I85 54 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 LINC00308Q8TCZ7 52 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 COPS9Q8WXC6 57 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 C22orf24Q9Y442 160 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 TRBV7-6A0A0J9YX20 115 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 M0R378 163 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 HINT1P49773 126 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-202ENST00000394943 RPL24P83731 157 aaKnown RBP4.32□□□□□ -1.72
LIMA1-202ENST00000394943 LINC01620Q4KN68 170 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 TOMM7Q9P0U1 55 aa4.32□□□□□ -1.72
LIMA1-202ENST00000394943 TMEM238C9JI98 176 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 CTAG1AP78358 180 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 MRPL55Q7Z7F7 128 aaKnown RBP4.31□□□□□ -1.72
LIMA1-202ENST00000394943 PCP2Q8IVA1 136 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 FAM168BA1KXE4 195 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 ZNF815PA8K554 130 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 PRYO14603 147 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 MIR7-3HGQ8N6C7 128 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 LINC00337Q8N6G1 96 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 VAMP8Q9BV40 100 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 IGKV2-28A0A075B6P5 120 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 IGKV2D-28P01615 120 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 RPL18AQ02543 176 aaKnown RBP4.31□□□□□ -1.72
LIMA1-202ENST00000394943 LINC00528Q8N1L1 170 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 VPS25Q9BRG1 176 aa4.31□□□□□ -1.72
LIMA1-202ENST00000394943 A0A1B0GWB2 263 aa4.3□□□□□ -1.72
LIMA1-202ENST00000394943 PLA2G1BP04054 148 aaKnown RBP4.3□□□□□ -1.72
LIMA1-202ENST00000394943 EIF4EBP3O60516 100 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-202ENST00000394943 C7orf33Q8WU49 177 aa4.3□□□□□ -1.72
LIMA1-202ENST00000394943 M0QXV9 152 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 GAGE2BQ13066 116 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 SPINK6Q6UWN8 80 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 LINC00167Q96N53 147 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 NAA38Q9BRA0 125 aaKnown RBP4.29□□□□□ -1.72
LIMA1-202ENST00000394943 HSBP1L1C9JCN9 74 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 HNRNPA3P51991 378 aaKnown RBP4.29□□□□□ -1.72
LIMA1-202ENST00000394943 SPATA45Q537H7 98 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 CBY1Q9Y3M2 126 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 MYCBP2O75592 4640 aa4.29□□□□□ -1.72
LIMA1-202ENST00000394943 Q5VSD8 79 aa4.28□□□□□ -1.72
LIMA1-202ENST00000394943 KRTAP29-1A8MX34 341 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-202ENST00000394943 M0R143 59 aa4.28□□□□□ -1.72
LIMA1-202ENST00000394943 BCE1O60756 84 aa4.28□□□□□ -1.72
LIMA1-202ENST00000394943 PHF5AQ7RTV0 110 aaKnown RBP4.28□□□□□ -1.72
LIMA1-202ENST00000394943 RPL37AP61513 92 aaKnown RBP4.28□□□□□ -1.72
LIMA1-202ENST00000394943 PSORS1C2Q9UIG4 136 aa4.28□□□□□ -1.72
LIMA1-202ENST00000394943 PCLOQ9Y6V0 5065 aa4.28□□□□□ -1.73
LIMA1-202ENST00000394943 RAB37Q96AX2 223 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 KRTAP4-5Q9BYR2 181 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 TTTY13Q9BZ97 58 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 FAM229AH3BQW9 127 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 IGLV7-43P04211 117 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 LINC00158P58513 81 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 OXTP01178 125 aa4.27□□□□□ -1.73
LIMA1-202ENST00000394943 A0A0B4J2C4 111 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 GAGE2EQ4V326 116 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 SLC25A34Q6PIV7 304 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 GAGE2DQ9UEU5 116 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 PFN2P35080 140 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 PCP4P48539 62 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 LINC00483Q53H64 154 aa4.26□□□□□ -1.73
LIMA1-202ENST00000394943 XAGE1AQ9HD64 81 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms