RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TSPAN13O95857 204 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 SLPIP03973 132 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 Q8NDZ9 215 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 RMI2Q96E14 147 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 WWC2-AS2Q96NR7 200 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 PRO1854Q9UHT4 67 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.71□□□□□ -1.98
MCF2-201ENST00000338585 A0A0B4J2C4 111 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 A0A1W2PPM0 123 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 VAMP3Q15836 100 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 SND1-IT1Q9HBX3 110 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 VPS13DQ5THJ4 4388 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 IGKV2-28A0A075B6P5 120 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 IGKV2D-28P01615 120 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 PRR3P79522 188 aaKnown RBP2.71□□□□□ -1.98
MCF2-201ENST00000338585 SYCNQ0VAF6 134 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 COX17Q14061 63 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 C2orf48Q96LS8 159 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 XAGE1AQ9HD64 81 aa2.71□□□□□ -1.98
MCF2-201ENST00000338585 PSCAO43653 123 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 RPL13AP40429 203 aaKnown RBP2.7□□□□□ -1.98
MCF2-201ENST00000338585 TTC32Q5I0X7 151 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 LINC00337Q8N6G1 96 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 DNAH10Q8IVF4 4471 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 TRBV30A0A0K0K1B3 111 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 LY6G6CO95867 125 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 Q6ZRN7 208 aaPredicted RBP2.7□□□□□ -1.98
MCF2-201ENST00000338585 CARD19Q96LW7 228 aa2.7□□□□□ -1.98
MCF2-201ENST00000338585 LOC107984156A0A0G2JMH3 177 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 FABP2P12104 132 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 Q1RN00 199 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 GAGE2EQ4V326 116 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 Q6ZRP5 223 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 ARL17AQ8IVW1 177 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 COPS9Q8WXC6 57 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 PPDPFQ9H3Y8 114 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 GAGE2DQ9UEU5 116 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 SPCS1Q9Y6A9 102 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.69□□□□□ -1.98
MCF2-201ENST00000338585 K7EP34 96 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 TRIAP1O43715 76 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 PSMB2P49721 201 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 Q6ZR54 194 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 LRCOL1A6NCL2 159 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 GAGE10A6NGK3 116 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 NDUFC2-KCTD14E9PQ53 114 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 NCR3O14931 201 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 UBE2V1Q13404 147 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 LINC00476Q8WZB0 136 aa2.69□□□□□ -1.98
MCF2-201ENST00000338585 RPL18AQ02543 176 aaKnown RBP2.68□□□□□ -1.98
MCF2-201ENST00000338585 C9orf129Q5T035 196 aaKnown RBP2.68□□□□□ -1.98
MCF2-201ENST00000338585 OR13C6PQ8NH95 151 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 KMT2AQ03164 3969 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 TRAV13-2A0A0B4J235 113 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 F8WDY8 70 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 H3BMG7 143 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 TCL1BO95988 128 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 FUSP35637 526 aaKnown RBP eCLIP2.68□□□□□ -1.98
MCF2-201ENST00000338585 LINC01620Q4KN68 170 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 MTURNQ8N3F0 131 aa2.68□□□□□ -1.98
MCF2-201ENST00000338585 HYDINQ4G0P3 5121 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 C3orf84H3BNL1 204 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 NDUFC2O95298 119 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 SCGB1C2P0DMR2 95 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 RNF151Q2KHN1 245 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 SMIM11BQ8TCY0 68 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 CLEC2BQ92478 149 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 FAM168BA1KXE4 195 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 VPREB1P12018 145 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 CNBPP62633 177 aaKnown RBP2.67□□□□□ -1.98
MCF2-201ENST00000338585 GAGE2BQ13066 116 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 SERTAD4-AS1Q5TG53 156 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 GTF2H5Q6ZYL4 71 aa2.67□□□□□ -1.98
MCF2-201ENST00000338585 TLX1NBP0CAT3 122 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 ALMS1Q8TCU4 4167 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 A0A087WTM6 91 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 A0A096LNI7 61 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 RPL28P46779 137 aaKnown RBP2.66□□□□□ -1.98
MCF2-201ENST00000338585 C14orf177Q52M58 125 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 S100A7L2Q5SY68 101 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 C1orf134Q5TEV5 83 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 KRTAP7-1Q8IUC3 87 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 Q8N814 137 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 FAM218AQ96MZ4 157 aa2.66□□□□□ -1.98
MCF2-201ENST00000338585 IGKV2-24A0A0C4DH68 120 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 TRBV10-3A0A0K0K1G6 114 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 LOC107984640A0A0U1RRK4 108 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 IGLV6-57P01721 117 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 CHTF8P0CG12 524 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 LCE4AQ5TA78 99 aa2.65□□□□□ -1.98
MCF2-201ENST00000338585 TRBV10-2A0A0K0K1G8 114 aa2.65□□□□□ -1.99
MCF2-201ENST00000338585 COX6CP09669 75 aa2.65□□□□□ -1.99
MCF2-201ENST00000338585 LYRM7Q5U5X0 104 aa2.65□□□□□ -1.99
MCF2-201ENST00000338585 FAM19A5Q7Z5A7 132 aaPredicted RBP2.65□□□□□ -1.99
MCF2-201ENST00000338585 TMEM126AQ9H061 195 aa2.65□□□□□ -1.99
MCF2-201ENST00000338585 PRO0461Q9UI25 63 aa2.65□□□□□ -1.99
MCF2-201ENST00000338585 DNAH6Q9C0G6 4158 aa2.64□□□□□ -1.99
MCF2-201ENST00000338585 TRBV20-1A0A075B6N2 111 aa2.64□□□□□ -1.99
MCF2-201ENST00000338585 C9orf163Q8N9P6 203 aa2.64□□□□□ -1.99
MCF2-201ENST00000338585 DNAH2Q9P225 4427 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms