RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PMCHL2Q9BQD1 86 aa8.64□□□□□ -1.03
LIMS1-201ENST00000332345 LINC00587B1AMM8 73 aa8.63□□□□□ -1.03
LIMS1-201ENST00000332345 LINC00158P58513 81 aa8.63□□□□□ -1.03
LIMS1-201ENST00000332345 PLEKHB2Q96CS7 222 aa8.63□□□□□ -1.03
LIMS1-201ENST00000332345 MYMXA0A1B0GTQ4 84 aa8.62□□□□□ -1.03
LIMS1-201ENST00000332345 SYS1-DBNDD2H3BUS1 97 aa8.62□□□□□ -1.03
LIMS1-201ENST00000332345 LEPROTO15243 131 aa8.62□□□□□ -1.03
LIMS1-201ENST00000332345 MRPL55Q7Z7F7 128 aaKnown RBP8.62□□□□□ -1.03
LIMS1-201ENST00000332345 SND1-IT1Q9HBX3 110 aa8.62□□□□□ -1.03
LIMS1-201ENST00000332345 NDUFA12Q9UI09 145 aa8.62□□□□□ -1.03
LIMS1-201ENST00000332345 LRP1Q07954 4544 aaKnown RBP8.62□□□□□ -1.03
LIMS1-201ENST00000332345 IGLV7-43P04211 117 aa8.61□□□□□ -1.03
LIMS1-201ENST00000332345 RPL24P83731 157 aaKnown RBP8.61□□□□□ -1.03
LIMS1-201ENST00000332345 KRTAP11-1Q8IUC1 163 aa8.61□□□□□ -1.03
LIMS1-201ENST00000332345 NKAPP1Q8N9T2 125 aa8.61□□□□□ -1.03
LIMS1-201ENST00000332345 FAT3Q8TDW7 4589 aa8.6□□□□□ -1.03
LIMS1-201ENST00000332345 IGLV5-37A0A075B6J1 123 aa8.6□□□□□ -1.03
LIMS1-201ENST00000332345 MEIG1Q5JSS6 88 aa8.6□□□□□ -1.03
LIMS1-201ENST00000332345 REG3GQ6UW15 175 aa8.6□□□□□ -1.03
LIMS1-201ENST00000332345 PET117Q6UWS5 81 aa8.6□□□□□ -1.03
LIMS1-201ENST00000332345 J3QQQ9 107 aa8.59□□□□□ -1.03
LIMS1-201ENST00000332345 LINC00167Q96N53 147 aa8.59□□□□□ -1.03
LIMS1-201ENST00000332345 A0A0U1RRA0 63 aa8.58□□□□□ -1.04
LIMS1-201ENST00000332345 SMIM13P0DJ93 91 aa8.58□□□□□ -1.04
LIMS1-201ENST00000332345 LGALS3P17931 250 aaKnown RBP8.58□□□□□ -1.04
LIMS1-201ENST00000332345 NMUP48645 174 aa8.58□□□□□ -1.04
LIMS1-201ENST00000332345 LINC01545Q5VT33 79 aa8.58□□□□□ -1.04
LIMS1-201ENST00000332345 DIRC1Q969H9 104 aa8.57□□□□□ -1.04
LIMS1-201ENST00000332345 GAGE10A6NGK3 116 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 RPL37AP8A6NKH3 93 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 C3orf79P0CE67 100 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 TSPEAR-AS2P59090 65 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 KRTDAPP60985 99 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 LINC01600Q96MT4 127 aa8.56□□□□□ -1.04
LIMS1-201ENST00000332345 E9PLD3 99 aa8.55□□□□□ -1.04
LIMS1-201ENST00000332345 VPREB1P12018 145 aa8.55□□□□□ -1.04
LIMS1-201ENST00000332345 MIR7-3HGQ8N6C7 128 aa8.55□□□□□ -1.04
LIMS1-201ENST00000332345 HERC1Q15751 4861 aa8.54□□□□□ -1.04
LIMS1-201ENST00000332345 C20orf202A1L168 122 aa8.53□□□□□ -1.04
LIMS1-201ENST00000332345 ZNF861PO60384 105 aa8.53□□□□□ -1.04
LIMS1-201ENST00000332345 BCE1O60756 84 aa8.53□□□□□ -1.04
LIMS1-201ENST00000332345 H0Y9J4 135 aa8.52□□□□□ -1.05
LIMS1-201ENST00000332345 S100A6P06703 90 aa8.52□□□□□ -1.05
LIMS1-201ENST00000332345 AKR1D1P51857 326 aa8.52□□□□□ -1.05
LIMS1-201ENST00000332345 BOD1L2Q8IYS8 172 aa8.52□□□□□ -1.05
LIMS1-201ENST00000332345 IGLV1-50A0A075B6I6 118 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 IGKV2-28A0A075B6P5 120 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 M0R378 163 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 EIF4EBP3O60516 100 aaPredicted RBP8.51□□□□□ -1.05
LIMS1-201ENST00000332345 IGKV2D-28P01615 120 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 MT1HL1P0DM35 61 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 S100A2P29034 98 aa8.51□□□□□ -1.05
LIMS1-201ENST00000332345 RPL28P46779 137 aaKnown RBP8.51□□□□□ -1.05
LIMS1-201ENST00000332345 LOC107984156A0A0G2JMH3 177 aa8.49□□□□□ -1.05
LIMS1-201ENST00000332345 ARL17AQ8IVW1 177 aa8.49□□□□□ -1.05
LIMS1-201ENST00000332345 Q8NDZ9 215 aa8.49□□□□□ -1.05
LIMS1-201ENST00000332345 IGKV2D-26A0A0A0MRZ7 120 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 A0A0J9YXY3 114 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 KRTAP10-8P60410 259 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 HIST3H2BBQ8N257 126 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 DAND5Q8N907 189 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 MIEN1Q9BRT3 115 aa8.48□□□□□ -1.05
LIMS1-201ENST00000332345 UBE2AP49459 152 aa8.47□□□□□ -1.05
LIMS1-201ENST00000332345 HIST1H2BLQ99880 126 aa8.46□□□□□ -1.06
LIMS1-201ENST00000332345 TMEM126AQ9H061 195 aa8.46□□□□□ -1.06
LIMS1-201ENST00000332345 TNXBP22105 4242 aa8.46□□□□□ -1.06
LIMS1-201ENST00000332345 ZNF815PA8K554 130 aa8.45□□□□□ -1.06
LIMS1-201ENST00000332345 TMEM238C9JI98 176 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 NCR3O14931 201 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 TIMM17BO60830 172 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 SNRPEP62304 92 aaKnown RBP8.44□□□□□ -1.06
LIMS1-201ENST00000332345 S100A12P80511 92 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 ADAMTSL4-AS1Q5T5F5 129 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 FAM19A1Q7Z5A9 133 aa8.44□□□□□ -1.06
LIMS1-201ENST00000332345 TRBV10-2A0A0K0K1G8 114 aa8.43□□□□□ -1.06
LIMS1-201ENST00000332345 NDUFC2O95298 119 aa8.43□□□□□ -1.06
LIMS1-201ENST00000332345 ATOH7Q8N100 152 aa8.43□□□□□ -1.06
LIMS1-201ENST00000332345 KRTAP13-1Q8IUC0 172 aa8.42□□□□□ -1.06
LIMS1-201ENST00000332345 KCNQ1DNQ9H478 68 aa8.42□□□□□ -1.06
LIMS1-201ENST00000332345 SPANXB1Q9NS25 103 aaPredicted RBP8.42□□□□□ -1.06
LIMS1-201ENST00000332345 PRYO14603 147 aa8.41□□□□□ -1.06
LIMS1-201ENST00000332345 KRTAP1-4P0C5Y4 121 aa8.41□□□□□ -1.06
LIMS1-201ENST00000332345 NPC2P61916 151 aa8.41□□□□□ -1.06
LIMS1-201ENST00000332345 PRR26Q8N8Z3 221 aa8.41□□□□□ -1.06
LIMS1-201ENST00000332345 TRBV10-3A0A0K0K1G6 114 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 C5orf52A6NGY3 159 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 RPL13AP40429 203 aaKnown RBP8.4□□□□□ -1.06
LIMS1-201ENST00000332345 PRLHP81277 87 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 ANKRD39Q53RE8 183 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 SCGB1D4Q6XE38 83 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 TTTY13Q9BZ97 58 aa8.4□□□□□ -1.06
LIMS1-201ENST00000332345 DDTP30046 118 aa8.39□□□□□ -1.07
LIMS1-201ENST00000332345 S100A7L2Q5SY68 101 aa8.39□□□□□ -1.07
LIMS1-201ENST00000332345 SOSTDC1Q6X4U4 206 aa8.39□□□□□ -1.07
LIMS1-201ENST00000332345 LINC00308Q8TCZ7 52 aa8.39□□□□□ -1.07
LIMS1-201ENST00000332345 LITAFQ99732 161 aa8.39□□□□□ -1.07
LIMS1-201ENST00000332345 HSBP1L1C9JCN9 74 aa8.38□□□□□ -1.07
LIMS1-201ENST00000332345 LINC00337Q8N6G1 96 aa8.38□□□□□ -1.07
LIMS1-201ENST00000332345 ETDCA0A1B0GVM5 59 aa8.37□□□□□ -1.07
LIMS1-201ENST00000332345 SPRR1AP35321 89 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms