RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PCOTHQ58A44 107 aa8.1□□□□□ -1.11
VPS39-201ENST00000318006 FAM218AQ96MZ4 157 aa8.1□□□□□ -1.11
VPS39-201ENST00000318006 A8MTW9 85 aa8.1□□□□□ -1.11
VPS39-201ENST00000318006 PLAC8L1A1L4L8 177 aa8.09□□□□□ -1.11
VPS39-201ENST00000318006 IGLV9-49A0A0B4J1Y8 123 aa8.09□□□□□ -1.12
VPS39-201ENST00000318006 SPATA3Q8NHX4 192 aa8.09□□□□□ -1.12
VPS39-201ENST00000318006 A0A087WSZ3 146 aa8.08□□□□□ -1.12
VPS39-201ENST00000318006 IGLV5-45A0A087WSX0 123 aa8.08□□□□□ -1.12
VPS39-201ENST00000318006 EPG5Q9HCE0 2579 aa8.07□□□□□ -1.12
VPS39-201ENST00000318006 REG3GQ6UW15 175 aa8.07□□□□□ -1.12
VPS39-201ENST00000318006 SMIM29Q86T20 159 aa8.07□□□□□ -1.12
VPS39-201ENST00000318006 C6orf223Q8N319 242 aa8.07□□□□□ -1.12
VPS39-201ENST00000318006 ACANP16112 2415 aa8.06□□□□□ -1.12
VPS39-201ENST00000318006 ANKRD17O75179 2603 aaKnown RBP8.05□□□□□ -1.12
VPS39-201ENST00000318006 IGHV3OR16-9A0A0B4J2B5 98 aa8.05□□□□□ -1.12
VPS39-201ENST00000318006 NHLRC4P0CG21 123 aaPredicted RBP8.05□□□□□ -1.12
VPS39-201ENST00000318006 F8WDY8 70 aa8.04□□□□□ -1.12
VPS39-201ENST00000318006 FHL3Q13643 280 aa8.04□□□□□ -1.12
VPS39-201ENST00000318006 C1orf64Q8NEQ6 169 aa8.04□□□□□ -1.12
VPS39-201ENST00000318006 FAM19A4Q96LR4 140 aa8.04□□□□□ -1.12
VPS39-201ENST00000318006 C2orf48Q96LS8 159 aa8.03□□□□□ -1.12
VPS39-201ENST00000318006 IGHV6-1A0A0B4J1U7 121 aa8.03□□□□□ -1.12
VPS39-201ENST00000318006 DEFB116Q30KQ4 102 aa8.03□□□□□ -1.12
VPS39-201ENST00000318006 Q6ZQT0 140 aa8.03□□□□□ -1.12
VPS39-201ENST00000318006 Q9BRP9 147 aa8.03□□□□□ -1.12
VPS39-201ENST00000318006 C11orf72Q8NBR9 251 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 Q6ZTC4 211 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 SMCR5Q8TEV8 140 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 LINC00474Q9P2X8 69 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 LOC110117498A0A087WWA1 95 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 DNAH14Q0VDD8 3507 aa8.02□□□□□ -1.13
VPS39-201ENST00000318006 Q9UF83 564 aa8.01□□□□□ -1.13
VPS39-201ENST00000318006 TM2D3Q9BRN9 247 aa8□□□□□ -1.13
VPS39-201ENST00000318006 C7orf33Q8WU49 177 aa8□□□□□ -1.13
VPS39-201ENST00000318006 A0A1B0GW54 56 aa8□□□□□ -1.13
VPS39-201ENST00000318006 LITAFQ99732 161 aa8□□□□□ -1.13
VPS39-201ENST00000318006 M0R2N4 97 aa7.99□□□□□ -1.13
VPS39-201ENST00000318006 KIAA0087Q14695 138 aa7.99□□□□□ -1.13
VPS39-201ENST00000318006 LAMA1P25391 3075 aa7.98□□□□□ -1.13
VPS39-201ENST00000318006 WDFY4Q6ZS81 3184 aa7.98□□□□□ -1.13
VPS39-201ENST00000318006 Q6ZRU5 148 aa7.97□□□□□ -1.13
VPS39-201ENST00000318006 KLK9Q2XQG4 91 aa7.97□□□□□ -1.13
VPS39-201ENST00000318006 SERTAD4-AS1Q5TG53 156 aa7.96□□□□□ -1.13
VPS39-201ENST00000318006 COL27A1Q8IZC6 1860 aaPredicted RBP7.96□□□□□ -1.13
VPS39-201ENST00000318006 H3BPC8 53 aa7.95□□□□□ -1.14
VPS39-201ENST00000318006 LYPD5Q6UWN5 251 aa7.95□□□□□ -1.14
VPS39-201ENST00000318006 ZNF292O60281 2723 aa7.95□□□□□ -1.14
VPS39-201ENST00000318006 VCANP13611 3396 aa7.94□□□□□ -1.14
VPS39-201ENST00000318006 ERC2-IT1O76042 136 aa7.94□□□□□ -1.14
VPS39-201ENST00000318006 CFAP54Q96N23 3096 aa7.94□□□□□ -1.14
VPS39-201ENST00000318006 ELOF1P60002 83 aaKnown RBP7.93□□□□□ -1.14
VPS39-201ENST00000318006 MGAQ8IWI9 3026 aa7.93□□□□□ -1.14
VPS39-201ENST00000318006 SPAG11AQ6PDA7 123 aa7.93□□□□□ -1.14
VPS39-201ENST00000318006 TP53AIP1Q9HCN2 124 aa7.93□□□□□ -1.14
VPS39-201ENST00000318006 A0A1B0GU69 56 aa7.92□□□□□ -1.14
VPS39-201ENST00000318006 FSHBP01225 129 aa7.92□□□□□ -1.14
VPS39-201ENST00000318006 LINC00336Q6ZUF6 198 aa7.92□□□□□ -1.14
VPS39-201ENST00000318006 NUPR2A6NF83 97 aa7.92□□□□□ -1.14
VPS39-201ENST00000318006 VPS13AQ96RL7 3174 aa7.91□□□□□ -1.14
VPS39-201ENST00000318006 LY6G6CO95867 125 aa7.91□□□□□ -1.14
VPS39-201ENST00000318006 KLKP1Q107X0 134 aa7.91□□□□□ -1.14
VPS39-201ENST00000318006 Q8NBF4 154 aa7.91□□□□□ -1.14
VPS39-201ENST00000318006 SPINK1P00995 79 aa7.91□□□□□ -1.14
VPS39-201ENST00000318006 SPTBN5Q9NRC6 3674 aaKnown RBP7.91□□□□□ -1.14
VPS39-201ENST00000318006 CIRBP-AS1Q8TBR5 109 aa7.9□□□□□ -1.14
VPS39-201ENST00000318006 PRLHP81277 87 aa7.9□□□□□ -1.15
VPS39-201ENST00000318006 C22orf24Q9Y442 160 aa7.9□□□□□ -1.15
VPS39-201ENST00000318006 C6orf48Q9UBA6 75 aa7.89□□□□□ -1.15
VPS39-201ENST00000318006 EYSQ5T1H1 3165 aa7.89□□□□□ -1.15
VPS39-201ENST00000318006 MUC4Q99102 2169 aa7.89□□□□□ -1.15
VPS39-201ENST00000318006 RETNLBQ9BQ08 111 aa7.88□□□□□ -1.15
VPS39-201ENST00000318006 REV3LO60673 3130 aa7.88□□□□□ -1.15
VPS39-201ENST00000318006 ACYP2P14621 99 aa7.88□□□□□ -1.15
VPS39-201ENST00000318006 A8MUN3 132 aa7.87□□□□□ -1.15
VPS39-201ENST00000318006 C8orf87E5RJ46 101 aa7.87□□□□□ -1.15
VPS39-201ENST00000318006 CYP4F30PQ9H0H9 118 aa7.87□□□□□ -1.15
VPS39-201ENST00000318006 COL6A3P12111 3177 aa7.86□□□□□ -1.15
VPS39-201ENST00000318006 TRAV22A0A0B4J277 110 aa7.86□□□□□ -1.15
VPS39-201ENST00000318006 X6R8D5 127 aa7.86□□□□□ -1.15
VPS39-201ENST00000318006 VPREB1P12018 145 aa7.85□□□□□ -1.15
VPS39-201ENST00000318006 CD164Q04900 197 aa7.85□□□□□ -1.15
VPS39-201ENST00000318006 H7BZZ5 65 aa7.85□□□□□ -1.15
VPS39-201ENST00000318006 FLNBO75369 2602 aaKnown RBP7.84□□□□□ -1.15
VPS39-201ENST00000318006 LINC00167Q96N53 147 aa7.84□□□□□ -1.15
VPS39-201ENST00000318006 F8P00451 2351 aa7.83□□□□□ -1.16
VPS39-201ENST00000318006 LINC01556Q5JQF7 62 aa7.83□□□□□ -1.16
VPS39-201ENST00000318006 ATP11AUNQ6ZP68 121 aa7.83□□□□□ -1.16
VPS39-201ENST00000318006 AKAP13Q12802 2813 aa7.83□□□□□ -1.16
VPS39-201ENST00000318006 EIF4EBP3O60516 100 aaPredicted RBP7.83□□□□□ -1.16
VPS39-201ENST00000318006 LINC00476Q8WZB0 136 aa7.82□□□□□ -1.16
VPS39-201ENST00000318006 TNRC18O15417 2968 aaPredicted RBP7.82□□□□□ -1.16
VPS39-201ENST00000318006 Q6ZRX8 168 aa7.82□□□□□ -1.16
VPS39-201ENST00000318006 CELSR3Q9NYQ7 3312 aa7.81□□□□□ -1.16
VPS39-201ENST00000318006 TRBV7-4A0A0J9YYF1 115 aa7.8□□□□□ -1.16
VPS39-201ENST00000318006 IGLV6-57P01721 117 aa7.8□□□□□ -1.16
VPS39-201ENST00000318006 H3BNG1 76 aa7.79□□□□□ -1.16
VPS39-201ENST00000318006 WIPF1O43516 503 aa7.79□□□□□ -1.16
VPS39-201ENST00000318006 HECTD1Q9ULT8 2610 aa7.79□□□□□ -1.16
VPS39-201ENST00000318006 IGKV2D-30A0A075B6S6 120 aa7.79□□□□□ -1.16
VPS39-201ENST00000318006 IGKV2-30P06310 120 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms