RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 LINC01561Q8N1V8 128 aa4.16□□□□□ -1.74
DEPDC4-201ENST00000299185 NDUFA12Q9UI09 145 aa4.16□□□□□ -1.74
DEPDC4-201ENST00000299185 PAM16Q9Y3D7 125 aa4.16□□□□□ -1.74
DEPDC4-201ENST00000299185 E9PLD3 99 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 J3QQQ9 107 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 LGALS3P17931 250 aaKnown RBP4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 PFN2P35080 140 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 CKS1BP61024 79 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 GAGE2BQ13066 116 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 GAGE2EQ4V326 116 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 C6orf226Q5I0X4 101 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 DAND5Q8N907 189 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 C2orf48Q96LS8 159 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 GAGE2DQ9UEU5 116 aa4.15□□□□□ -1.75
DEPDC4-201ENST00000299185 FAM168BA1KXE4 195 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 ZNF815PA8K554 130 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 SMIM13P0DJ93 91 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 NPC2P61916 151 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 Q8NDZ9 215 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 XAGE1AQ9HD64 81 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 HERC1Q15751 4861 aa4.14□□□□□ -1.75
DEPDC4-201ENST00000299185 TSTD3H0UI37 97 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 MEIG1Q5JSS6 88 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 Q6ZRP5 223 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 C9orf163Q8N9P6 203 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 MIEN1Q9BRT3 115 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 PRO1933Q9H354 126 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 ERG28Q9UKR5 140 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 LRP1BQ9NZR2 4599 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 DNAH8Q96JB1 4490 aa4.13□□□□□ -1.75
DEPDC4-201ENST00000299185 A0A0J9YXY3 114 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 DLEU1O43261 78 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 COX8AP10176 69 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 CXCL5P42830 114 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 C9orf129Q5T035 196 aaKnown RBP4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 SERTAD4-AS1Q5TG53 156 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 SOSTDC1Q6X4U4 206 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 SDIM1Q6ZPB5 146 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 FAM19A5Q7Z5A7 132 aaPredicted RBP4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 KRTAP7-1Q8IUC3 87 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 C14orf144Q96I85 54 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 HECTD4Q9Y4D8 3996 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 PKD1P98161 4303 aa4.12□□□□□ -1.75
DEPDC4-201ENST00000299185 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 TRBV30A0A0K0K1B3 111 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 LOC107984640A0A0U1RRK4 108 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 MYMXA0A1B0GTQ4 84 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 LINC00158P58513 81 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 ADAMTSL4-AS1Q5T5F5 129 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 SLC25A34Q6PIV7 304 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 SCXQ7RTU7 201 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 BOD1L2Q8IYS8 172 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 MIR7-3HGQ8N6C7 128 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 SPACA4Q8TDM5 124 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 LITAFQ99732 161 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 UQCR10Q9UDW1 63 aa4.11□□□□□ -1.75
DEPDC4-201ENST00000299185 APOBP04114 4563 aaKnown RBP4.1□□□□□ -1.75
DEPDC4-201ENST00000299185 A0A1W2PNN7 141 aa4.1□□□□□ -1.75
DEPDC4-201ENST00000299185 LCE1AQ5T7P2 110 aa4.1□□□□□ -1.75
DEPDC4-201ENST00000299185 C2orf91Q6ZV80 131 aa4.1□□□□□ -1.75
DEPDC4-201ENST00000299185 SND1-IT1Q9HBX3 110 aa4.1□□□□□ -1.75
DEPDC4-201ENST00000299185 A0A087WYN8 130 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 GAGE10A6NGK3 116 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 NDUFC2-KCTD14E9PQ53 114 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 NCR3O14931 201 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 DDTP30046 118 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 SCGB1D4Q6XE38 83 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 Q6ZSA8 131 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 PHF5AQ7RTV0 110 aaKnown RBP4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 KRTAP11-1Q8IUC1 163 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 HIGD1BQ9P298 99 aa4.09□□□□□ -1.75
DEPDC4-201ENST00000299185 PCP4L1A6NKN8 68 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 F8WDY8 70 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 SMR3BP02814 79 aaPredicted RBP4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 PKHD1P08F94 4074 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 TLX1NBP0CAT3 122 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 XGP55808 180 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 PRR3P79522 188 aaKnown RBP4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 CIRBP-AS1Q8TBR5 109 aa4.08□□□□□ -1.76
DEPDC4-201ENST00000299185 M0QXV9 152 aa4.07□□□□□ -1.76
DEPDC4-201ENST00000299185 HNRNPA3P51991 378 aaKnown RBP4.07□□□□□ -1.76
DEPDC4-201ENST00000299185 HERV-K104P63124 156 aa4.07□□□□□ -1.76
DEPDC4-201ENST00000299185 CIRBPQ14011 172 aaKnown RBP4.07□□□□□ -1.76
DEPDC4-201ENST00000299185 SFTA2Q6UW10 78 aa4.07□□□□□ -1.76
DEPDC4-201ENST00000299185 VPREB1P12018 145 aa4.06□□□□□ -1.76
DEPDC4-201ENST00000299185 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
DEPDC4-201ENST00000299185 CTAG1AP78358 180 aa4.06□□□□□ -1.76
DEPDC4-201ENST00000299185 LINC00308Q8TCZ7 52 aa4.06□□□□□ -1.76
DEPDC4-201ENST00000299185 DPH3Q96FX2 82 aa4.06□□□□□ -1.76
DEPDC4-201ENST00000299185 LINC00587B1AMM8 73 aa4.05□□□□□ -1.76
DEPDC4-201ENST00000299185 TAL2Q16559 108 aa4.05□□□□□ -1.76
DEPDC4-201ENST00000299185 C7orf33Q8WU49 177 aa4.05□□□□□ -1.76
DEPDC4-201ENST00000299185 PLAC8Q9NZF1 115 aa4.05□□□□□ -1.76
DEPDC4-201ENST00000299185 RPL37AP8A6NKH3 93 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 TMEM238C9JI98 176 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 TIMM17BO60830 172 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 Q6ZVH6 145 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 MUSTN1Q8IVN3 82 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 SPANXDQ9BXN6 97 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms