RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 C19orf84I3L1E1 186 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 Q96MF0 132 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 IGHV4-30-2A0A087WSY4 118 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 A6NDX4 124 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 ZNF843Q8N446 348 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 MIR22HGQ0VDD5 57 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 CDSNQ15517 529 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 C6orf223Q8N319 242 aa3.47□□□□□ -1.85
CSMD3-201ENST00000297405 CYSRT1A8MQ03 144 aa3.46□□□□□ -1.85
CSMD3-201ENST00000297405 CAMK2N1Q7Z7J9 78 aa3.46□□□□□ -1.85
CSMD3-201ENST00000297405 A0A0C4DFX4 3053 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 IGHV4-38-2P0DP08 117 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 DAZAP2Q15038 168 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-201ENST00000297405 ADAMTSL4-AS1Q5T5F5 129 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 SPATA3Q8NHX4 192 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 COL4A2P08572 1712 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 IGKV2-28A0A075B6P5 120 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 F8W735 103 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-201ENST00000297405 IGKV2D-28P01615 120 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 CEP350Q5VT06 3117 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 A0A0J9YWU9 116 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 SLURP1P55000 103 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 RNF223E7ERA6 249 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 Q6ZTI0 123 aa3.46□□□□□ -1.86
CSMD3-201ENST00000297405 CEMP1Q6PRD7 247 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-201ENST00000297405 RUSC1-AS1Q66K80 236 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 UNQ9165/PRO28630Q6UXU0 137 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 A0A096LNJ9 63 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.45□□□□□ -1.86
CSMD3-201ENST00000297405 Q9BRP9 147 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 CELSR2Q9HCU4 2923 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 A0A096LPF7 62 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 URB1-AS1Q96HZ7 61 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 Q9UF83 564 aa3.45□□□□□ -1.86
CSMD3-201ENST00000297405 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-201ENST00000297405 SMCPP49901 116 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-201ENST00000297405 TFF2Q03403 129 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 Q75L30 129 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 A8MUN3 132 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 DEFB135Q30KP9 77 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 FAM215AQ9Y5M1 114 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 A8MWP4 228 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 LINC01554Q52M75 96 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 COA5Q86WW8 74 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 ZNF503-AS2A6NEH8 195 aa3.44□□□□□ -1.86
CSMD3-201ENST00000297405 SSBP3-AS1Q7Z2R9 100 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 A0A087WSZ3 146 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 SMIM29Q86T20 159 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 IGHV6-1A0A0B4J1U7 121 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 TRANK1O15050 2925 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 BRWD1-AS2P59051 145 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 KALRNO60229 2985 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 GVQW2A0A096LPI5 108 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-201ENST00000297405 FSHBP01225 129 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 IGHV4-61A0A0C4DH41 118 aa3.43□□□□□ -1.86
CSMD3-201ENST00000297405 MGAQ8IWI9 3026 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 TENM3Q9P273 2699 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 TSPEAR-AS2P59090 65 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 IGHV3OR16-9A0A0B4J2B5 98 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 IGKV2-24A0A0C4DH68 120 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 SPINK6Q6UWN8 80 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 DEFB131BA0A096LNP1 70 aa3.42□□□□□ -1.86
CSMD3-201ENST00000297405 LY6G6EA0A0G2JKS1 128 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 H3BS24 57 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 IGLV6-57P01721 117 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 CHTF8P0CG12 524 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 H3BNG1 76 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 DEFB136Q30KP8 78 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 NF1P21359 2839 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 EPM2AB3EWF7 344 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 TNP2Q05952 138 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 CHD7Q9P2D1 2997 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 IGLV1-40P01703 118 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 Q6ZRX8 168 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 Q6ZRP5 223 aa3.41□□□□□ -1.86
CSMD3-201ENST00000297405 SRRM2Q9UQ35 2752 aaKnown RBP3.4□□□□□ -1.86
CSMD3-201ENST00000297405 PDZD2O15018 2839 aa3.4□□□□□ -1.86
CSMD3-201ENST00000297405 RBM12B-AS1Q9P1G2 102 aa3.4□□□□□ -1.86
CSMD3-201ENST00000297405 MSMPQ1L6U9 139 aa3.4□□□□□ -1.86
CSMD3-201ENST00000297405 IGHV4-31P0DP07 118 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 IGHV4-30-4P0DP06 118 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 PLA2G2AP14555 144 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 A0A087X002 238 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 DEFB113Q30KQ7 82 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 PCOTHQ58A44 107 aa3.4□□□□□ -1.87
CSMD3-201ENST00000297405 IGLV4-60A0A075B6I1 120 aa3.39□□□□□ -1.87
CSMD3-201ENST00000297405 PRLHP81277 87 aa3.39□□□□□ -1.87
CSMD3-201ENST00000297405 LINC00313P59037 77 aa3.39□□□□□ -1.87
CSMD3-201ENST00000297405 CFAP54Q96N23 3096 aa3.39□□□□□ -1.87
CSMD3-201ENST00000297405 UNQ6190/PRO20217Q6UXQ8 127 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 HIVEP1P15822 2718 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 IGLV9-49A0A0B4J1Y8 123 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 LAMA2P24043 3122 aaKnown RBP3.38□□□□□ -1.87
CSMD3-201ENST00000297405 PHF5AQ7RTV0 110 aaKnown RBP3.38□□□□□ -1.87
CSMD3-201ENST00000297405 Q6YL49 198 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 Q6ZPA2 131 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 NUPR2A6NF83 97 aa3.38□□□□□ -1.87
CSMD3-201ENST00000297405 CRIP3Q6Q6R5 217 aa3.37□□□□□ -1.87
CSMD3-201ENST00000297405 PRO3102Q9H379 93 aa3.37□□□□□ -1.87
CSMD3-201ENST00000297405 KIF25-AS1Q9Y6Z4 181 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms