RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 IGKV2D-28P01615 120 aa8.6□□□□□ -1.03
HMGN3-201ENST00000275036 H0Y8G0 127 aa8.59□□□□□ -1.03
HMGN3-201ENST00000275036 RPL28P46779 137 aaKnown RBP8.59□□□□□ -1.03
HMGN3-201ENST00000275036 SFTA2Q6UW10 78 aa8.59□□□□□ -1.03
HMGN3-201ENST00000275036 KRTAP13-1Q8IUC0 172 aa8.59□□□□□ -1.03
HMGN3-201ENST00000275036 A0A0U1RRA0 63 aa8.58□□□□□ -1.04
HMGN3-201ENST00000275036 LEPROTL1O95214 131 aa8.58□□□□□ -1.04
HMGN3-201ENST00000275036 LINC00158P58513 81 aa8.57□□□□□ -1.04
HMGN3-201ENST00000275036 TMEM238C9JI98 176 aa8.56□□□□□ -1.04
HMGN3-201ENST00000275036 A0A087X002 238 aa8.55□□□□□ -1.04
HMGN3-201ENST00000275036 SMIM13P0DJ93 91 aa8.55□□□□□ -1.04
HMGN3-201ENST00000275036 FABP4P15090 132 aa8.55□□□□□ -1.04
HMGN3-201ENST00000275036 TSPEAR-AS2P59090 65 aa8.55□□□□□ -1.04
HMGN3-201ENST00000275036 RPL24P83731 157 aaKnown RBP8.55□□□□□ -1.04
HMGN3-201ENST00000275036 RPL13AP40429 203 aaKnown RBP8.54□□□□□ -1.04
HMGN3-201ENST00000275036 UBE2AP49459 152 aa8.54□□□□□ -1.04
HMGN3-201ENST00000275036 SMCPP49901 116 aaPredicted RBP8.54□□□□□ -1.04
HMGN3-201ENST00000275036 TMEM126AQ9H061 195 aa8.54□□□□□ -1.04
HMGN3-201ENST00000275036 ANAPC11Q9NYG5 84 aa8.54□□□□□ -1.04
HMGN3-201ENST00000275036 M0R378 163 aa8.53□□□□□ -1.04
HMGN3-201ENST00000275036 PRLHP81277 87 aa8.53□□□□□ -1.04
HMGN3-201ENST00000275036 PMCHL2Q9BQD1 86 aa8.53□□□□□ -1.04
HMGN3-201ENST00000275036 NDUFA12Q9UI09 145 aa8.53□□□□□ -1.04
HMGN3-201ENST00000275036 MEIG1Q5JSS6 88 aa8.52□□□□□ -1.05
HMGN3-201ENST00000275036 MIR7-3HGQ8N6C7 128 aa8.52□□□□□ -1.05
HMGN3-201ENST00000275036 HSPB8Q9UJY1 196 aa8.52□□□□□ -1.05
HMGN3-201ENST00000275036 HERV-K104P63124 156 aa8.51□□□□□ -1.05
HMGN3-201ENST00000275036 FAM19A1Q7Z5A9 133 aa8.51□□□□□ -1.05
HMGN3-201ENST00000275036 LEPROTO15243 131 aa8.5□□□□□ -1.05
HMGN3-201ENST00000275036 DPM2O94777 84 aa8.5□□□□□ -1.05
HMGN3-201ENST00000275036 PLNP26678 52 aa8.5□□□□□ -1.05
HMGN3-201ENST00000275036 MYMXA0A1B0GTQ4 84 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BKO60814 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BJP06899 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 CRYGAP11844 174 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BOP23527 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BBP33778 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BDP58876 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BCP62807 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST2H2BEQ16778 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 KRTAP13-2Q52LG2 175 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.49□□□□□ -1.05
HMGN3-201ENST00000275036 BOD1L2Q8IYS8 172 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BHQ93079 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BNQ99877 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 HIST1H2BMQ99879 126 aa8.49□□□□□ -1.05
HMGN3-201ENST00000275036 ATP6V1G1O75348 118 aa8.48□□□□□ -1.05
HMGN3-201ENST00000275036 IGKCP01834 107 aa8.48□□□□□ -1.05
HMGN3-201ENST00000275036 PLEKHB2Q96CS7 222 aa8.48□□□□□ -1.05
HMGN3-201ENST00000275036 J3QQQ9 107 aa8.47□□□□□ -1.05
HMGN3-201ENST00000275036 NCR3O14931 201 aa8.47□□□□□ -1.05
HMGN3-201ENST00000275036 DAND5Q8N907 189 aa8.47□□□□□ -1.05
HMGN3-201ENST00000275036 TYMSOSQ8TAI1 123 aa8.46□□□□□ -1.06
HMGN3-201ENST00000275036 MAP1LC3CQ9BXW4 147 aa8.46□□□□□ -1.06
HMGN3-201ENST00000275036 MUC2Q02817 5179 aa8.46□□□□□ -1.06
HMGN3-201ENST00000275036 LINC00587B1AMM8 73 aa8.45□□□□□ -1.06
HMGN3-201ENST00000275036 TSPAN13O95857 204 aa8.44□□□□□ -1.06
HMGN3-201ENST00000275036 HERVK_113P61574 105 aa8.44□□□□□ -1.06
HMGN3-201ENST00000275036 FAM229BQ4G0N7 80 aa8.44□□□□□ -1.06
HMGN3-201ENST00000275036 IGKV2D-26A0A0A0MRZ7 120 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 LOC107984156A0A0G2JMH3 177 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 TRBV10-3A0A0K0K1G6 114 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 SYS1-DBNDD2H3BUS1 97 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 PRYO14603 147 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 LGALS3P17931 250 aaKnown RBP8.43□□□□□ -1.06
HMGN3-201ENST00000275036 NMUP48645 174 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 LCE2CQ5TA81 110 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 ARL17AQ8IVW1 177 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 HIGD2AQ9BW72 106 aa8.43□□□□□ -1.06
HMGN3-201ENST00000275036 KRTAP4-16G5E9R7 235 aaPredicted RBP8.42□□□□□ -1.06
HMGN3-201ENST00000275036 SPRR1AP35321 89 aa8.42□□□□□ -1.06
HMGN3-201ENST00000275036 PRR4Q16378 134 aa8.42□□□□□ -1.06
HMGN3-201ENST00000275036 KCNQ1DNQ9H478 68 aa8.42□□□□□ -1.06
HMGN3-201ENST00000275036 E9PLD3 99 aa8.41□□□□□ -1.06
HMGN3-201ENST00000275036 EIF4EBP3O60516 100 aaPredicted RBP8.4□□□□□ -1.06
HMGN3-201ENST00000275036 LINC00337Q8N6G1 96 aa8.4□□□□□ -1.06
HMGN3-201ENST00000275036 A0A0J9YXY3 114 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 ADAMTSL4-AS1Q5T5F5 129 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 LINC01545Q5VT33 79 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 SOSTDC1Q6X4U4 206 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 C3orf22Q8N5N4 141 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 SPRR4Q96PI1 79 aa8.39□□□□□ -1.07
HMGN3-201ENST00000275036 TRBV10-2A0A0K0K1G8 114 aa8.37□□□□□ -1.07
HMGN3-201ENST00000275036 NPC2P61916 151 aa8.37□□□□□ -1.07
HMGN3-201ENST00000275036 COA6Q5JTJ3 125 aaKnown RBP8.37□□□□□ -1.07
HMGN3-201ENST00000275036 LINC00304Q8N9R0 145 aa8.37□□□□□ -1.07
HMGN3-201ENST00000275036 SMCR5Q8TEV8 140 aa8.37□□□□□ -1.07
HMGN3-201ENST00000275036 ETDCA0A1B0GVM5 59 aa8.36□□□□□ -1.07
HMGN3-201ENST00000275036 C3orf79P0CE67 100 aa8.36□□□□□ -1.07
HMGN3-201ENST00000275036 DDTP30046 118 aa8.36□□□□□ -1.07
HMGN3-201ENST00000275036 PET117Q6UWS5 81 aa8.36□□□□□ -1.07
HMGN3-201ENST00000275036 SPANXB1Q9NS25 103 aaPredicted RBP8.36□□□□□ -1.07
HMGN3-201ENST00000275036 B5MCH6 92 aa8.35□□□□□ -1.07
HMGN3-201ENST00000275036 NDUFC2O95298 119 aa8.35□□□□□ -1.07
HMGN3-201ENST00000275036 LITAFQ99732 161 aa8.35□□□□□ -1.07
HMGN3-201ENST00000275036 MIEN1Q9BRT3 115 aa8.35□□□□□ -1.07
HMGN3-201ENST00000275036 IGLV6-57P01721 117 aa8.34□□□□□ -1.07
HMGN3-201ENST00000275036 TTTY13Q9BZ97 58 aa8.34□□□□□ -1.07
HMGN3-201ENST00000275036 ERC2-IT1O76042 136 aa8.33□□□□□ -1.08
HMGN3-201ENST00000275036 RETNLBQ9BQ08 111 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms