RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DAD1P61803 113 aa9.87□□□□□ -0.83
SDC1-201ENST00000254351 XAGE1AQ9HD64 81 aa9.87□□□□□ -0.83
SDC1-201ENST00000254351 FASNP49327 2511 aaKnown RBP9.86□□□□□ -0.83
SDC1-201ENST00000254351 C10orf25Q5T742 122 aa9.86□□□□□ -0.83
SDC1-201ENST00000254351 Q6ZQT0 140 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 C16orf74Q96GX8 76 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 BRK1Q8WUW1 75 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 VWFP04275 2813 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 WIPF1O43516 503 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 UNQ6190/PRO20217Q6UXQ8 127 aa9.85□□□□□ -0.83
SDC1-201ENST00000254351 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.84□□□□□ -0.83
SDC1-201ENST00000254351 LINC01006Q8NI28 216 aa9.84□□□□□ -0.83
SDC1-201ENST00000254351 UNC79Q9P2D8 2635 aa9.84□□□□□ -0.83
SDC1-201ENST00000254351 ATP5EP2Q5VTU8 51 aa9.84□□□□□ -0.83
SDC1-201ENST00000254351 F8P00451 2351 aa9.84□□□□□ -0.83
SDC1-201ENST00000254351 LINC00575Q6W349 94 aa9.83□□□□□ -0.84
SDC1-201ENST00000254351 TRAV7A0A075B6U4 112 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 IGHV4-31P0DP07 118 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 FP248Q71RG6 208 aaPredicted RBP9.82□□□□□ -0.84
SDC1-201ENST00000254351 CHCHD10Q8WYQ3 142 aaPredicted RBP9.82□□□□□ -0.84
SDC1-201ENST00000254351 J3QLI3 93 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 Q8IZM0 81 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 SERP1Q9Y6X1 66 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 NOTCH2Q04721 2471 aa9.82□□□□□ -0.84
SDC1-201ENST00000254351 HTN3P15516 51 aa9.81□□□□□ -0.84
SDC1-201ENST00000254351 PDZD2O15018 2839 aa9.81□□□□□ -0.84
SDC1-201ENST00000254351 LRCOL1A6NCL2 159 aa9.8□□□□□ -0.84
SDC1-201ENST00000254351 MRAPQ8TCY5 172 aa9.8□□□□□ -0.84
SDC1-201ENST00000254351 HECTD1Q9ULT8 2610 aa9.79□□□□□ -0.84
SDC1-201ENST00000254351 PRB2P02812 416 aaPredicted RBP9.79□□□□□ -0.84
SDC1-201ENST00000254351 LINC00167Q96N53 147 aa9.79□□□□□ -0.84
SDC1-201ENST00000254351 ITPR2Q14571 2701 aa9.79□□□□□ -0.84
SDC1-201ENST00000254351 TRBV7-6A0A0J9YX20 115 aa9.78□□□□□ -0.84
SDC1-201ENST00000254351 ZNF561-AS1K7EIQ3 104 aa9.78□□□□□ -0.84
SDC1-201ENST00000254351 KIAA0087Q14695 138 aa9.78□□□□□ -0.84
SDC1-201ENST00000254351 NDUFC2-KCTD14E9PQ53 114 aa9.78□□□□□ -0.84
SDC1-201ENST00000254351 REG3AQ06141 175 aa9.77□□□□□ -0.85
SDC1-201ENST00000254351 TRBV10-3A0A0K0K1G6 114 aa9.77□□□□□ -0.85
SDC1-201ENST00000254351 FAM229BQ4G0N7 80 aa9.77□□□□□ -0.85
SDC1-201ENST00000254351 LINC00482Q8N8I6 264 aa9.77□□□□□ -0.85
SDC1-201ENST00000254351 PRO0628Q9UI54 55 aa9.76□□□□□ -0.85
SDC1-201ENST00000254351 C3orf84H3BNL1 204 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 MUC7Q8TAX7 377 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 IGHV4-28A0A0C4DH34 117 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 CYSRT1A8MQ03 144 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 BPY2O14599 106 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 SPAG11BQ08648 103 aa9.75□□□□□ -0.85
SDC1-201ENST00000254351 FSHBP01225 129 aa9.74□□□□□ -0.85
SDC1-201ENST00000254351 MIFP14174 115 aa9.74□□□□□ -0.85
SDC1-201ENST00000254351 CSNK1G2-AS1Q8NCQ2 148 aa9.74□□□□□ -0.85
SDC1-201ENST00000254351 KLKP1Q107X0 134 aa9.73□□□□□ -0.85
SDC1-201ENST00000254351 NREPQ16612 68 aa9.73□□□□□ -0.85
SDC1-201ENST00000254351 CD164L2Q6UWJ8 174 aa9.73□□□□□ -0.85
SDC1-201ENST00000254351 DEFB105AQ8NG35 78 aa9.73□□□□□ -0.85
SDC1-201ENST00000254351 SMIM26A0A096LP01 95 aa9.72□□□□□ -0.85
SDC1-201ENST00000254351 C16orf95Q9H693 158 aa9.72□□□□□ -0.85
SDC1-201ENST00000254351 KLK12Q9UKR0 248 aa9.72□□□□□ -0.85
SDC1-201ENST00000254351 CELA1Q9UNI1 258 aa9.72□□□□□ -0.85
SDC1-201ENST00000254351 PKD1L1Q8TDX9 2849 aa9.72□□□□□ -0.85
SDC1-201ENST00000254351 DNAJC9-AS1A6NH13 148 aa9.71□□□□□ -0.85
SDC1-201ENST00000254351 TMEM254Q8TBM7 123 aa9.71□□□□□ -0.85
SDC1-201ENST00000254351 HIGD2BQ4VC39 106 aa9.71□□□□□ -0.86
SDC1-201ENST00000254351 KRTAP1-1Q07627 177 aa9.7□□□□□ -0.86
SDC1-201ENST00000254351 LOC110117498A0A087WWA1 95 aa9.69□□□□□ -0.86
SDC1-201ENST00000254351 C19orf73Q9NVV2 129 aa9.69□□□□□ -0.86
SDC1-201ENST00000254351 PRO0255Q9UI72 69 aa9.69□□□□□ -0.86
SDC1-201ENST00000254351 HIGD2AQ9BW72 106 aa9.69□□□□□ -0.86
SDC1-201ENST00000254351 DIRC1Q969H9 104 aa9.68□□□□□ -0.86
SDC1-201ENST00000254351 TEP1Q99973 2627 aaKnown RBP9.68□□□□□ -0.86
SDC1-201ENST00000254351 A0A1B0GUV1 79 aa9.68□□□□□ -0.86
SDC1-201ENST00000254351 DEFB135Q30KP9 77 aa9.68□□□□□ -0.86
SDC1-201ENST00000254351 BAHCC1Q9P281 2608 aa9.67□□□□□ -0.86
SDC1-201ENST00000254351 PRR4Q16378 134 aa9.67□□□□□ -0.86
SDC1-201ENST00000254351 HIVEP1P15822 2718 aa9.67□□□□□ -0.86
SDC1-201ENST00000254351 COX17Q14061 63 aa9.67□□□□□ -0.86
SDC1-201ENST00000254351 TRBV7-4A0A0J9YYF1 115 aa9.67□□□□□ -0.86
SDC1-201ENST00000254351 ZNF73O43830 326 aaPredicted RBP9.67□□□□□ -0.86
SDC1-201ENST00000254351 FAM30AQ9NZY2 134 aa9.66□□□□□ -0.86
SDC1-201ENST00000254351 COX7BP24311 80 aa9.65□□□□□ -0.87
SDC1-201ENST00000254351 CXCL6P80162 114 aa9.65□□□□□ -0.87
SDC1-201ENST00000254351 IGLV6-57P01721 117 aa9.64□□□□□ -0.87
SDC1-201ENST00000254351 EPM2AB3EWF7 344 aa9.63□□□□□ -0.87
SDC1-201ENST00000254351 IGLV1-51P01701 117 aa9.63□□□□□ -0.87
SDC1-201ENST00000254351 C6orf48Q9UBA6 75 aa9.62□□□□□ -0.87
SDC1-201ENST00000254351 ATRQ13535 2644 aa9.61□□□□□ -0.87
SDC1-201ENST00000254351 OTOGQ6ZRI0 2925 aa9.61□□□□□ -0.87
SDC1-201ENST00000254351 FUSP35637 526 aaKnown RBP eCLIP9.61□□□□□ -0.872e-6■■□□□ 12.3
SDC1-201ENST00000254351 TENM1Q9UKZ4 2725 aa9.6□□□□□ -0.87
SDC1-201ENST00000254351 SMR3AQ99954 134 aa9.6□□□□□ -0.87
SDC1-201ENST00000254351 X6R8D5 127 aa9.6□□□□□ -0.87
SDC1-201ENST00000254351 PRYO14603 147 aa9.59□□□□□ -0.87
SDC1-201ENST00000254351 C1orf195Q5TG92 126 aa9.58□□□□□ -0.88
SDC1-201ENST00000254351 C9orf66Q5T8R8 295 aa9.58□□□□□ -0.88
SDC1-201ENST00000254351 CAMK2N2Q96S95 79 aa9.58□□□□□ -0.88
SDC1-201ENST00000254351 IGKV4-1P06312 121 aa9.57□□□□□ -0.88
SDC1-201ENST00000254351 PDE6GP18545 87 aa9.57□□□□□ -0.88
SDC1-201ENST00000254351 SMIM29Q86T20 159 aa9.56□□□□□ -0.88
SDC1-201ENST00000254351 FLNBO75369 2602 aaKnown RBP9.56□□□□□ -0.88
SDC1-201ENST00000254351 TRRAPQ9Y4A5 3859 aa9.56□□□□□ -0.88
SDC1-201ENST00000254351 PSPHP1O15172 72 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms