RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 ST20-AS1Q8NBB2 130 aa8.7□□□□□ -1.02
VAMP4-201ENST00000236192 C2CD3Q4AC94 2353 aa8.7□□□□□ -1.02
VAMP4-201ENST00000236192 C6orf48Q9UBA6 75 aa8.7□□□□□ -1.02
VAMP4-201ENST00000236192 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
VAMP4-201ENST00000236192 PHF5AQ7RTV0 110 aaKnown RBP8.68□□□□□ -1.02
VAMP4-201ENST00000236192 IGKV2-24A0A0C4DH68 120 aa8.67□□□□□ -1.02
VAMP4-201ENST00000236192 IGHV6-1A0A0B4J1U7 121 aa8.67□□□□□ -1.02
VAMP4-201ENST00000236192 GPR179Q6PRD1 2367 aa8.66□□□□□ -1.02
VAMP4-201ENST00000236192 GVQW2A0A096LPI5 108 aaPredicted RBP8.66□□□□□ -1.02
VAMP4-201ENST00000236192 LINC00528Q8N1L1 170 aa8.66□□□□□ -1.02
VAMP4-201ENST00000236192 COL27A1Q8IZC6 1860 aaPredicted RBP8.65□□□□□ -1.03
VAMP4-201ENST00000236192 C7orf33Q8WU49 177 aa8.65□□□□□ -1.03
VAMP4-201ENST00000236192 LINC00476Q8WZB0 136 aa8.64□□□□□ -1.03
VAMP4-201ENST00000236192 ANKHD1Q8IWZ3 2542 aaKnown RBP8.64□□□□□ -1.03
VAMP4-201ENST00000236192 Q6ZRX8 168 aa8.64□□□□□ -1.03
VAMP4-201ENST00000236192 ACACAQ13085 2346 aa8.63□□□□□ -1.03
VAMP4-201ENST00000236192 A0A096LNT2 108 aa8.63□□□□□ -1.03
VAMP4-201ENST00000236192 RPL37AP61513 92 aaKnown RBP8.63□□□□□ -1.03
VAMP4-201ENST00000236192 UQCR11O14957 56 aa8.62□□□□□ -1.03
VAMP4-201ENST00000236192 PLA2G2AP14555 144 aa8.62□□□□□ -1.03
VAMP4-201ENST00000236192 LINC00313P59037 77 aa8.62□□□□□ -1.03
VAMP4-201ENST00000236192 MIR22HGQ0VDD5 57 aa8.6□□□□□ -1.03
VAMP4-201ENST00000236192 KCNQ1DNQ9H478 68 aa8.6□□□□□ -1.03
VAMP4-201ENST00000236192 A8MWP4 228 aa8.6□□□□□ -1.03
VAMP4-201ENST00000236192 MOBPQ13875 183 aa8.6□□□□□ -1.03
VAMP4-201ENST00000236192 EP300Q09472 2414 aaPredicted RBP8.58□□□□□ -1.04
VAMP4-201ENST00000236192 A0A0C4DFX4 3053 aa8.58□□□□□ -1.04
VAMP4-201ENST00000236192 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
VAMP4-201ENST00000236192 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
VAMP4-201ENST00000236192 SPINK6Q6UWN8 80 aa8.57□□□□□ -1.04
VAMP4-201ENST00000236192 IGLV9-49A0A0B4J1Y8 123 aa8.57□□□□□ -1.04
VAMP4-201ENST00000236192 Q8N377 158 aa8.57□□□□□ -1.04
VAMP4-201ENST00000236192 WNK1Q9H4A3 2382 aa8.56□□□□□ -1.04
VAMP4-201ENST00000236192 C14orf177Q52M58 125 aa8.54□□□□□ -1.04
VAMP4-201ENST00000236192 A0A1W2PNM2 257 aa8.53□□□□□ -1.04
VAMP4-201ENST00000236192 IGLV5-48A0A075B6I7 105 aa8.52□□□□□ -1.05
VAMP4-201ENST00000236192 IGLV7-46A0A075B6I9 117 aa8.52□□□□□ -1.05
VAMP4-201ENST00000236192 IGLV1-51P01701 117 aa8.51□□□□□ -1.05
VAMP4-201ENST00000236192 SPINT4Q6UDR6 99 aa8.51□□□□□ -1.05
VAMP4-201ENST00000236192 A6NN06 94 aa8.5□□□□□ -1.05
VAMP4-201ENST00000236192 DSCR10P59022 87 aa8.5□□□□□ -1.05
VAMP4-201ENST00000236192 PRLHP81277 87 aa8.5□□□□□ -1.05
VAMP4-201ENST00000236192 IGFL1Q6UW32 110 aa8.47□□□□□ -1.05
VAMP4-201ENST00000236192 DEFB131BA0A096LNP1 70 aa8.47□□□□□ -1.05
VAMP4-201ENST00000236192 NBASA2RRP1 2371 aa8.47□□□□□ -1.05
VAMP4-201ENST00000236192 DEFB113Q30KQ7 82 aa8.47□□□□□ -1.05
VAMP4-201ENST00000236192 SPINK1P00995 79 aa8.46□□□□□ -1.05
VAMP4-201ENST00000236192 WDR87Q6ZQQ6 2873 aa8.45□□□□□ -1.06
VAMP4-201ENST00000236192 SPINK7P58062 85 aa8.44□□□□□ -1.06
VAMP4-201ENST00000236192 ASB16-AS1Q495Z4 193 aa8.43□□□□□ -1.06
VAMP4-201ENST00000236192 IGLV8-61A0A075B6I0 122 aa8.43□□□□□ -1.06
VAMP4-201ENST00000236192 SPRR4Q96PI1 79 aa8.43□□□□□ -1.06
VAMP4-201ENST00000236192 ATRXP46100 2492 aa8.42□□□□□ -1.06
VAMP4-201ENST00000236192 A0A1W2PPR1 153 aa8.42□□□□□ -1.06
VAMP4-201ENST00000236192 MRPL34Q9BQ48 92 aaKnown RBP8.41□□□□□ -1.06
VAMP4-201ENST00000236192 IGLV1-50A0A075B6I6 118 aa8.41□□□□□ -1.06
VAMP4-201ENST00000236192 C1orf134Q5TEV5 83 aa8.4□□□□□ -1.06
VAMP4-201ENST00000236192 ZCCHC13Q8WW36 166 aaKnown RBP8.4□□□□□ -1.06
VAMP4-201ENST00000236192 SSBP3-AS1Q7Z2R9 100 aa8.39□□□□□ -1.07
VAMP4-201ENST00000236192 CSAG1Q6PB30 78 aa8.38□□□□□ -1.07
VAMP4-201ENST00000236192 CSPG4Q6UVK1 2322 aa8.38□□□□□ -1.07
VAMP4-201ENST00000236192 C8orf17Q9NRJ1 99 aa8.37□□□□□ -1.07
VAMP4-201ENST00000236192 PRO3102Q9H379 93 aa8.37□□□□□ -1.07
VAMP4-201ENST00000236192 LINC00612Q8N6U2 182 aa8.36□□□□□ -1.07
VAMP4-201ENST00000236192 J3QKU1 62 aa8.36□□□□□ -1.07
VAMP4-201ENST00000236192 Q8NAQ8 132 aa8.35□□□□□ -1.07
VAMP4-201ENST00000236192 EP400Q96L91 3159 aa8.35□□□□□ -1.07
VAMP4-201ENST00000236192 PRR26Q8N8Z3 221 aa8.35□□□□□ -1.07
VAMP4-201ENST00000236192 PRR34Q9NV39 138 aa8.35□□□□□ -1.07
VAMP4-201ENST00000236192 SPG11Q96JI7 2443 aa8.34□□□□□ -1.07
VAMP4-201ENST00000236192 X6R8D5 127 aa8.33□□□□□ -1.08
VAMP4-201ENST00000236192 Q8NDZ9 215 aa8.33□□□□□ -1.08
VAMP4-201ENST00000236192 DNAH12Q6ZR08 3092 aa8.33□□□□□ -1.08
VAMP4-201ENST00000236192 C9orf163Q8N9P6 203 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 A0A0G2JQZ4 141 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 LCE6AA0A183 80 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 A0A1W2PNN7 141 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 A8MU10 97 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 LINC01556Q5JQF7 62 aa8.32□□□□□ -1.08
VAMP4-201ENST00000236192 PLA2G1BP04054 148 aaKnown RBP8.32□□□□□ -1.08
VAMP4-201ENST00000236192 IGKV2D-30A0A075B6S6 120 aa8.31□□□□□ -1.08
VAMP4-201ENST00000236192 IGKV2-30P06310 120 aa8.31□□□□□ -1.08
VAMP4-201ENST00000236192 CSNK1G2-AS1Q8NCQ2 148 aa8.31□□□□□ -1.08
VAMP4-201ENST00000236192 PLA2G2DQ9UNK4 145 aa8.31□□□□□ -1.08
VAMP4-201ENST00000236192 FAM168BA1KXE4 195 aa8.3□□□□□ -1.08
VAMP4-201ENST00000236192 HRES1P13985 223 aa8.3□□□□□ -1.08
VAMP4-201ENST00000236192 A0A1B0GVX0 72 aa8.28□□□□□ -1.08
VAMP4-201ENST00000236192 CIRBP-AS1Q8TBR5 109 aa8.28□□□□□ -1.08
VAMP4-201ENST00000236192 GOLGB1Q14789 3259 aaKnown RBP8.27□□□□□ -1.08
VAMP4-201ENST00000236192 CNBPP62633 177 aaKnown RBP8.27□□□□□ -1.09
VAMP4-201ENST00000236192 FAM229AH3BQW9 127 aa8.27□□□□□ -1.09
VAMP4-201ENST00000236192 C15orf56Q8N910 161 aa8.26□□□□□ -1.09
VAMP4-201ENST00000236192 H3BNG1 76 aa8.25□□□□□ -1.09
VAMP4-201ENST00000236192 GIG44P09565 113 aaPredicted RBP8.25□□□□□ -1.09
VAMP4-201ENST00000236192 CENPFP49454 3210 aa8.24□□□□□ -1.09
VAMP4-201ENST00000236192 TLX1NBP0CAT3 122 aa8.23□□□□□ -1.09
VAMP4-201ENST00000236192 RIF1Q5UIP0 2472 aaKnown RBP8.21□□□□□ -1.1
VAMP4-201ENST00000236192 IGLV5-37A0A075B6J1 123 aa8.17□□□□□ -1.1
VAMP4-201ENST00000236192 MMP24-AS1A0A0U1RRL7 71 aa8.17□□□□□ -1.1
VAMP4-201ENST00000236192 PCNTO95613 3336 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms