RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 LINC00526Q96FQ7 95 aa12.58□□□□□ -0.4
CLN3-258ENST00000637184 GVQW2A0A096LPI5 108 aaPredicted RBP12.56□□□□□ -0.4
CLN3-258ENST00000637184 USP17L23D6RBM5 183 aa12.56□□□□□ -0.4
CLN3-258ENST00000637184 CTAG1AP78358 180 aa12.56□□□□□ -0.4
CLN3-258ENST00000637184 C6orf223Q8N319 242 aa12.56□□□□□ -0.4
CLN3-258ENST00000637184 NTN5Q8WTR8 489 aaPredicted RBP12.56□□□□□ -0.4
CLN3-258ENST00000637184 MEIG1Q5JSS6 88 aa12.55□□□□□ -0.4
CLN3-258ENST00000637184 KMT2AQ03164 3969 aa12.55□□□□□ -0.4
CLN3-258ENST00000637184 CIRBPQ14011 172 aaKnown RBP12.54□□□□□ -0.4
CLN3-258ENST00000637184 LECT2O14960 151 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 Q6ZRN7 208 aaPredicted RBP12.53□□□□□ -0.4
CLN3-258ENST00000637184 DNAH10Q8IVF4 4471 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 TMEM238C9JI98 176 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 TIMM17BO60830 172 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 UNQ6190/PRO20217Q6UXQ8 127 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 C2orf48Q96LS8 159 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 CAMK2N2Q96S95 79 aa12.53□□□□□ -0.4
CLN3-258ENST00000637184 DNAH6Q9C0G6 4158 aa12.52□□□□□ -0.4
CLN3-258ENST00000637184 LINC00587B1AMM8 73 aa12.52□□□□□ -0.41
CLN3-258ENST00000637184 SRSF9Q13242 221 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLN3-258ENST00000637184 HIST1H4GQ99525 98 aa12.52□□□□□ -0.41
CLN3-258ENST00000637184 F8WDY8 70 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 HSD52Q0P140 79 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 LITAFQ99732 161 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 SPANXB1Q9NS25 103 aaPredicted RBP12.51□□□□□ -0.41
CLN3-258ENST00000637184 A0A0U1RRA0 63 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 C10orf25Q5T742 122 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 ERG28Q9UKR5 140 aa12.51□□□□□ -0.41
CLN3-258ENST00000637184 SMIM13P0DJ93 91 aa12.5□□□□□ -0.41
CLN3-258ENST00000637184 ADAMTSL4-AS1Q5T5F5 129 aa12.5□□□□□ -0.41
CLN3-258ENST00000637184 C1orf134Q5TEV5 83 aa12.5□□□□□ -0.41
CLN3-258ENST00000637184 WFDC2Q14508 124 aa12.49□□□□□ -0.41
CLN3-258ENST00000637184 TAL2Q16559 108 aa12.49□□□□□ -0.41
CLN3-258ENST00000637184 PFN2P35080 140 aa12.48□□□□□ -0.41
CLN3-258ENST00000637184 LINC00158P58513 81 aa12.48□□□□□ -0.41
CLN3-258ENST00000637184 C14orf177Q52M58 125 aa12.48□□□□□ -0.41
CLN3-258ENST00000637184 Q6ZRU5 148 aa12.48□□□□□ -0.41
CLN3-258ENST00000637184 HINT1P49773 126 aaPredicted RBP12.47□□□□□ -0.41
CLN3-258ENST00000637184 SYCNQ0VAF6 134 aa12.47□□□□□ -0.41
CLN3-258ENST00000637184 Q6ZVH6 145 aa12.47□□□□□ -0.41
CLN3-258ENST00000637184 SPANXDQ9BXN6 97 aa12.47□□□□□ -0.41
CLN3-258ENST00000637184 SPANXCQ9NY87 97 aa12.47□□□□□ -0.41
CLN3-258ENST00000637184 C6orf48Q9UBA6 75 aa12.47□□□□□ -0.41
CLN3-258ENST00000637184 TRBV30A0A0K0K1B3 111 aa12.46□□□□□ -0.41
CLN3-258ENST00000637184 LRCOL1A6NCL2 159 aa12.46□□□□□ -0.41
CLN3-258ENST00000637184 COX17Q14061 63 aa12.46□□□□□ -0.41
CLN3-258ENST00000637184 C9orf116Q5BN46 136 aaPredicted RBP12.46□□□□□ -0.41
CLN3-258ENST00000637184 DAND5Q8N907 189 aa12.46□□□□□ -0.41
CLN3-258ENST00000637184 GCSHP23434 173 aa12.46□□□□□ -0.42
CLN3-258ENST00000637184 CEND1Q8N111 149 aa12.46□□□□□ -0.42
CLN3-258ENST00000637184 M0R143 59 aa12.45□□□□□ -0.42
CLN3-258ENST00000637184 MIR7-3HGQ8N6C7 128 aa12.44□□□□□ -0.42
CLN3-258ENST00000637184 CARD19Q96LW7 228 aa12.44□□□□□ -0.42
CLN3-258ENST00000637184 LCE6AA0A183 80 aa12.43□□□□□ -0.42
CLN3-258ENST00000637184 SLPIP03973 132 aa12.43□□□□□ -0.42
CLN3-258ENST00000637184 BVES-AS1Q5T3Y7 98 aa12.43□□□□□ -0.42
CLN3-258ENST00000637184 BATFQ16520 125 aa12.43□□□□□ -0.42
CLN3-258ENST00000637184 MUSTN1Q8IVN3 82 aa12.43□□□□□ -0.42
CLN3-258ENST00000637184 NPC2P61916 151 aa12.42□□□□□ -0.42
CLN3-258ENST00000637184 DNAH2Q9P225 4427 aa12.42□□□□□ -0.42
CLN3-258ENST00000637184 IFITM1P13164 125 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 HYDINQ4G0P3 5121 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 PTTG1IPP53801 180 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 LINC00308Q8TCZ7 52 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 COPS9Q8WXC6 57 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 SNHG12Q9BXW3 62 aa12.41□□□□□ -0.42
CLN3-258ENST00000637184 FXYD2P54710 66 aa12.4□□□□□ -0.42
CLN3-258ENST00000637184 RNF151Q2KHN1 245 aa12.4□□□□□ -0.42
CLN3-258ENST00000637184 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.39□□□□□ -0.43
CLN3-258ENST00000637184 A0A087WTM6 91 aa12.39□□□□□ -0.43
CLN3-258ENST00000637184 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.39□□□□□ -0.43
CLN3-258ENST00000637184 RPL24P83731 157 aaKnown RBP12.39□□□□□ -0.43
CLN3-258ENST00000637184 CNBPP62633 177 aaKnown RBP12.38□□□□□ -0.43
CLN3-258ENST00000637184 Q8N814 137 aa12.38□□□□□ -0.43
CLN3-258ENST00000637184 SACSQ9NZJ4 4579 aa12.37□□□□□ -0.43
CLN3-258ENST00000637184 TMEM238LA0A1B0GVL6 79 aa12.37□□□□□ -0.43
CLN3-258ENST00000637184 A6NJY4 79 aa12.37□□□□□ -0.43
CLN3-258ENST00000637184 EREGO14944 169 aa12.37□□□□□ -0.43
CLN3-258ENST00000637184 EIF4EBP3O60516 100 aaPredicted RBP12.37□□□□□ -0.43
CLN3-258ENST00000637184 SOSTDC1Q6X4U4 206 aa12.37□□□□□ -0.43
CLN3-258ENST00000637184 NDUFC2-KCTD14E9PQ53 114 aa12.36□□□□□ -0.43
CLN3-258ENST00000637184 PPDPFQ9H3Y8 114 aa12.35□□□□□ -0.43
CLN3-258ENST00000637184 SND1-IT1Q9HBX3 110 aa12.35□□□□□ -0.43
CLN3-258ENST00000637184 A4D1N5 150 aa12.35□□□□□ -0.43
CLN3-258ENST00000637184 RTL8CO15255 209 aa12.34□□□□□ -0.43
CLN3-258ENST00000637184 A6NDN8 102 aa12.33□□□□□ -0.44
CLN3-258ENST00000637184 TLX1NBP0CAT3 122 aa12.33□□□□□ -0.44
CLN3-258ENST00000637184 Q6ZRP5 223 aa12.33□□□□□ -0.44
CLN3-258ENST00000637184 NHP2Q9NX24 153 aaKnown RBP12.33□□□□□ -0.44
CLN3-258ENST00000637184 TNP2Q05952 138 aa12.32□□□□□ -0.44
CLN3-258ENST00000637184 DNAH17Q9UFH2 4485 aa12.31□□□□□ -0.44
CLN3-258ENST00000637184 LOC107984156A0A0G2JMH3 177 aa12.31□□□□□ -0.44
CLN3-258ENST00000637184 RPL18AQ02543 176 aaKnown RBP12.31□□□□□ -0.44
CLN3-258ENST00000637184 GAGE2EQ4V326 116 aa12.31□□□□□ -0.44
CLN3-258ENST00000637184 ARL17AQ8IVW1 177 aa12.31□□□□□ -0.44
CLN3-258ENST00000637184 GAGE2DQ9UEU5 116 aa12.31□□□□□ -0.44
CLN3-258ENST00000637184 XAGE1AQ9HD64 81 aa12.3□□□□□ -0.44
CLN3-258ENST00000637184 FRAS1Q86XX4 4008 aa12.3□□□□□ -0.44
CLN3-258ENST00000637184 LOC107984640A0A0U1RRK4 108 aa12.3□□□□□ -0.44
CLN3-258ENST00000637184 CFC1BP0CG36 223 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms