RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DAND5Q8N907 189 aa11.29□□□□□ -0.6
CLN3-252ENST00000636907 IBA57-AS1B1ANH7 110 aa11.28□□□□□ -0.6
CLN3-252ENST00000636907 C1orf43Q9BWL3 253 aa11.28□□□□□ -0.6
CLN3-252ENST00000636907 IGKV2D-24A0A075B6R9 120 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 TMEM238LA0A1B0GVL6 79 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 A6NJY4 79 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 CFAP161Q6P656 301 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 SFTA2Q6UW10 78 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 C2orf82Q6UX34 121 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 Q9HAA7 133 aa11.27□□□□□ -0.6
CLN3-252ENST00000636907 NPC2P61916 151 aa11.27□□□□□ -0.61
CLN3-252ENST00000636907 UBE2DNLQ8IWF7 75 aa11.27□□□□□ -0.61
CLN3-252ENST00000636907 RAB37Q96AX2 223 aa11.27□□□□□ -0.61
CLN3-252ENST00000636907 A0A1B0GWB2 263 aa11.26□□□□□ -0.61
CLN3-252ENST00000636907 SPAG11BQ08648 103 aa11.26□□□□□ -0.61
CLN3-252ENST00000636907 FBN3Q75N90 2809 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 A4D1N5 150 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 CXCL5P42830 114 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 CKS1BP61024 79 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 RPL24P83731 157 aaKnown RBP11.25□□□□□ -0.61
CLN3-252ENST00000636907 COX11Q9Y6N1 276 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 STARD9Q9P2P6 4700 aa11.25□□□□□ -0.61
CLN3-252ENST00000636907 DNAH1Q9P2D7 4330 aa11.24□□□□□ -0.61
CLN3-252ENST00000636907 EIF4EBP3O60516 100 aaPredicted RBP11.24□□□□□ -0.61
CLN3-252ENST00000636907 C6orf223Q8N319 242 aa11.24□□□□□ -0.61
CLN3-252ENST00000636907 IFITM1P13164 125 aa11.24□□□□□ -0.61
CLN3-252ENST00000636907 LINC00526Q96FQ7 95 aa11.24□□□□□ -0.61
CLN3-252ENST00000636907 LYSTQ99698 3801 aa11.24□□□□□ -0.61
CLN3-252ENST00000636907 LINC00308Q8TCZ7 52 aa11.23□□□□□ -0.61
CLN3-252ENST00000636907 ERG28Q9UKR5 140 aa11.23□□□□□ -0.61
CLN3-252ENST00000636907 CFC1BP0CG36 223 aa11.22□□□□□ -0.61
CLN3-252ENST00000636907 CFC1P0CG37 223 aa11.22□□□□□ -0.61
CLN3-252ENST00000636907 C9orf118A6NHY6 69 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 PFN2P35080 140 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 LINC00158P58513 81 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 SOSTDC1Q6X4U4 206 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 MIR7-3HGQ8N6C7 128 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 C15orf56Q8N910 161 aa11.21□□□□□ -0.61
CLN3-252ENST00000636907 NAA38Q9BRA0 125 aaKnown RBP11.2□□□□□ -0.62
CLN3-252ENST00000636907 HIGD2BQ4VC39 106 aa11.2□□□□□ -0.62
CLN3-252ENST00000636907 C10orf25Q5T742 122 aa11.2□□□□□ -0.62
CLN3-252ENST00000636907 NTN5Q8WTR8 489 aaPredicted RBP11.2□□□□□ -0.62
CLN3-252ENST00000636907 KRTAP1-5Q9BYS1 174 aa11.2□□□□□ -0.62
CLN3-252ENST00000636907 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.19□□□□□ -0.62
CLN3-252ENST00000636907 H3BUT2 72 aa11.19□□□□□ -0.62
CLN3-252ENST00000636907 UNQ6190/PRO20217Q6UXQ8 127 aa11.19□□□□□ -0.62
CLN3-252ENST00000636907 RMI2Q96E14 147 aa11.18□□□□□ -0.62
CLN3-252ENST00000636907 A0A0B4J2C4 111 aa11.17□□□□□ -0.62
CLN3-252ENST00000636907 ZNF561-AS1K7EIQ3 104 aa11.17□□□□□ -0.62
CLN3-252ENST00000636907 C9orf116Q5BN46 136 aaPredicted RBP11.17□□□□□ -0.62
CLN3-252ENST00000636907 COPS9Q8WXC6 57 aa11.17□□□□□ -0.62
CLN3-252ENST00000636907 CASC10Q5T4H9 136 aa11.17□□□□□ -0.62
CLN3-252ENST00000636907 PPDPFQ9H3Y8 114 aa11.16□□□□□ -0.62
CLN3-252ENST00000636907 PGPEP1Q9NXJ5 209 aa11.16□□□□□ -0.62
CLN3-252ENST00000636907 GVQW2A0A096LPI5 108 aaPredicted RBP11.15□□□□□ -0.62
CLN3-252ENST00000636907 COX17Q14061 63 aa11.15□□□□□ -0.62
CLN3-252ENST00000636907 PRO1854Q9UHT4 67 aa11.15□□□□□ -0.62
CLN3-252ENST00000636907 MUC7Q8TAX7 377 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 TENM2Q9NT68 2774 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 TSPAN13O95857 204 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 VAMP3Q15836 100 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 C2orf48Q96LS8 159 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 CAMK2N2Q96S95 79 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 C6orf48Q9UBA6 75 aa11.14□□□□□ -0.63
CLN3-252ENST00000636907 A0A1W2PPM0 123 aa11.13□□□□□ -0.63
CLN3-252ENST00000636907 VPS13DQ5THJ4 4388 aa11.12□□□□□ -0.63
CLN3-252ENST00000636907 USP17L23D6RBM5 183 aa11.11□□□□□ -0.63
CLN3-252ENST00000636907 Q6ZRU5 148 aa11.11□□□□□ -0.63
CLN3-252ENST00000636907 NBDYA0A0U1RRE5 68 aa11.11□□□□□ -0.63
CLN3-252ENST00000636907 SND1-IT1Q9HBX3 110 aa11.11□□□□□ -0.63
CLN3-252ENST00000636907 TRBV30A0A0K0K1B3 111 aa11.1□□□□□ -0.63
CLN3-252ENST00000636907 H7C2G1 150 aa11.1□□□□□ -0.63
CLN3-252ENST00000636907 FABP2P12104 132 aa11.09□□□□□ -0.63
CLN3-252ENST00000636907 TTC32Q5I0X7 151 aa11.09□□□□□ -0.63
CLN3-252ENST00000636907 WWC2-AS2Q96NR7 200 aa11.09□□□□□ -0.63
CLN3-252ENST00000636907 F8WDY8 70 aa11.08□□□□□ -0.64
CLN3-252ENST00000636907 DNAH10Q8IVF4 4471 aa11.08□□□□□ -0.64
CLN3-252ENST00000636907 LOC107984156A0A0G2JMH3 177 aa11.08□□□□□ -0.64
CLN3-252ENST00000636907 LECT2O14960 151 aa11.08□□□□□ -0.64
CLN3-252ENST00000636907 ARL17AQ8IVW1 177 aa11.08□□□□□ -0.64
CLN3-252ENST00000636907 RPL13AP40429 203 aaKnown RBP11.07□□□□□ -0.64
CLN3-252ENST00000636907 TGP01266 2768 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 IGKV2-28A0A075B6P5 120 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 IGKV2D-28P01615 120 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 SYCNQ0VAF6 134 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 Q1RN00 199 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 SPCS1Q9Y6A9 102 aa11.06□□□□□ -0.64
CLN3-252ENST00000636907 SLPIP03973 132 aa11.05□□□□□ -0.64
CLN3-252ENST00000636907 UBE2V1Q13404 147 aa11.05□□□□□ -0.64
CLN3-252ENST00000636907 GAGE10A6NGK3 116 aa11.04□□□□□ -0.64
CLN3-252ENST00000636907 K7EP34 96 aa11.04□□□□□ -0.64
CLN3-252ENST00000636907 PSCAO43653 123 aa11.04□□□□□ -0.64
CLN3-252ENST00000636907 WFDC2Q14508 124 aa11.04□□□□□ -0.64
CLN3-252ENST00000636907 LINC00337Q8N6G1 96 aa11.04□□□□□ -0.64
CLN3-252ENST00000636907 CARD19Q96LW7 228 aa11.03□□□□□ -0.64
CLN3-252ENST00000636907 M0R2N4 97 aa11.02□□□□□ -0.64
CLN3-252ENST00000636907 PSMB2P49721 201 aa11.02□□□□□ -0.64
CLN3-252ENST00000636907 GTF2H5Q6ZYL4 71 aa11.02□□□□□ -0.64
CLN3-252ENST00000636907 TRAV13-2A0A0B4J235 113 aa11.01□□□□□ -0.65
CLN3-252ENST00000636907 Q8NDZ9 215 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms