RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SPAG11BQ08648 103 aa13.32□□□□□ -0.28
CLN3-250ENST00000636839 HSD52Q0P140 79 aa13.32□□□□□ -0.28
CLN3-250ENST00000636839 KMT2AQ03164 3969 aa13.32□□□□□ -0.28
CLN3-250ENST00000636839 GCSHP23434 173 aa13.32□□□□□ -0.28
CLN3-250ENST00000636839 NBDYA0A0U1RRE5 68 aa13.31□□□□□ -0.28
CLN3-250ENST00000636839 APOMO95445 188 aa13.31□□□□□ -0.28
CLN3-250ENST00000636839 SRSF9Q13242 221 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLN3-250ENST00000636839 C10orf25Q5T742 122 aa13.31□□□□□ -0.28
CLN3-250ENST00000636839 LECT2O14960 151 aa13.3□□□□□ -0.28
CLN3-250ENST00000636839 FXYD2P54710 66 aa13.3□□□□□ -0.28
CLN3-250ENST00000636839 CFAP161Q6P656 301 aa13.3□□□□□ -0.28
CLN3-250ENST00000636839 EIF4EBP3O60516 100 aaPredicted RBP13.29□□□□□ -0.28
CLN3-250ENST00000636839 SMIM13P0DJ93 91 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 CKS1BP61024 79 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 NPC2P61916 151 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 UNQ6190/PRO20217Q6UXQ8 127 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 C9orf116Q5BN46 136 aaPredicted RBP13.29□□□□□ -0.28
CLN3-250ENST00000636839 MEIG1Q5JSS6 88 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 CEND1Q8N111 149 aa13.29□□□□□ -0.28
CLN3-250ENST00000636839 SPANXB1Q9NS25 103 aaPredicted RBP13.27□□□□□ -0.28
CLN3-250ENST00000636839 LY6G6CO95867 125 aa13.27□□□□□ -0.29
CLN3-250ENST00000636839 PFN2P35080 140 aa13.27□□□□□ -0.29
CLN3-250ENST00000636839 HERV-K104P63124 156 aa13.27□□□□□ -0.29
CLN3-250ENST00000636839 NTN5Q8WTR8 489 aaPredicted RBP13.26□□□□□ -0.29
CLN3-250ENST00000636839 TMEM238C9JI98 176 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 WFDC2Q14508 124 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 MUSTN1Q8IVN3 82 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 RMI2Q96E14 147 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 USP17L23D6RBM5 183 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 TM2D2Q9BX73 214 aa13.25□□□□□ -0.29
CLN3-250ENST00000636839 ZNF561-AS1K7EIQ3 104 aa13.24□□□□□ -0.29
CLN3-250ENST00000636839 PCP4P48539 62 aa13.24□□□□□ -0.29
CLN3-250ENST00000636839 TAL2Q16559 108 aa13.24□□□□□ -0.29
CLN3-250ENST00000636839 C3orf84H3BNL1 204 aa13.23□□□□□ -0.29
CLN3-250ENST00000636839 TIMM17BO60830 172 aa13.23□□□□□ -0.29
CLN3-250ENST00000636839 ERG28Q9UKR5 140 aa13.23□□□□□ -0.29
CLN3-250ENST00000636839 LINC00158P58513 81 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 CIRBPQ14011 172 aaKnown RBP13.22□□□□□ -0.29
CLN3-250ENST00000636839 COL5A1-AS1Q5SY13 56 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 PTTG1IPP53801 180 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 TTC32Q5I0X7 151 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 SPANXDQ9BXN6 97 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 SPANXCQ9NY87 97 aa13.22□□□□□ -0.29
CLN3-250ENST00000636839 GVQW2A0A096LPI5 108 aaPredicted RBP13.21□□□□□ -0.29
CLN3-250ENST00000636839 SOSTDC1Q6X4U4 206 aa13.21□□□□□ -0.29
CLN3-250ENST00000636839 MIR7-3HGQ8N6C7 128 aa13.21□□□□□ -0.29
CLN3-250ENST00000636839 LINC00476Q8WZB0 136 aa13.21□□□□□ -0.29
CLN3-250ENST00000636839 K7ERJ3 54 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 SLPIP03973 132 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 CXCL5P42830 114 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 Q6ZVH6 145 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 C6orf48Q9UBA6 75 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 PSCAO43653 123 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 Q6ZRU5 148 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 CAMK2N2Q96S95 79 aa13.2□□□□□ -0.3
CLN3-250ENST00000636839 COX11Q9Y6N1 276 aa13.19□□□□□ -0.3
CLN3-250ENST00000636839 Q6ZR54 194 aa13.18□□□□□ -0.3
CLN3-250ENST00000636839 Q6ZRN7 208 aaPredicted RBP13.18□□□□□ -0.3
CLN3-250ENST00000636839 NHP2Q9NX24 153 aaKnown RBP13.18□□□□□ -0.3
CLN3-250ENST00000636839 SFTA2Q6UW10 78 aa13.18□□□□□ -0.3
CLN3-250ENST00000636839 LINC00308Q8TCZ7 52 aa13.18□□□□□ -0.3
CLN3-250ENST00000636839 A4D1N5 150 aa13.17□□□□□ -0.3
CLN3-250ENST00000636839 HYDINQ4G0P3 5121 aa13.16□□□□□ -0.3
CLN3-250ENST00000636839 C2orf48Q96LS8 159 aa13.15□□□□□ -0.3
CLN3-250ENST00000636839 DNAH2Q9P225 4427 aa13.14□□□□□ -0.31
CLN3-250ENST00000636839 RAB37Q96AX2 223 aa13.14□□□□□ -0.31
CLN3-250ENST00000636839 CFC1BP0CG36 223 aa13.13□□□□□ -0.31
CLN3-250ENST00000636839 CFC1P0CG37 223 aa13.13□□□□□ -0.31
CLN3-250ENST00000636839 SYCNQ0VAF6 134 aa13.13□□□□□ -0.31
CLN3-250ENST00000636839 LRCOL1A6NCL2 159 aa13.12□□□□□ -0.31
CLN3-250ENST00000636839 A6NDN8 102 aa13.12□□□□□ -0.31
CLN3-250ENST00000636839 TAX1BP3O14907 124 aa13.12□□□□□ -0.31
CLN3-250ENST00000636839 RPL24P83731 157 aaKnown RBP13.12□□□□□ -0.31
CLN3-250ENST00000636839 ALMS1Q8TCU4 4167 aa13.11□□□□□ -0.31
CLN3-250ENST00000636839 IFITM1P13164 125 aa13.11□□□□□ -0.31
CLN3-250ENST00000636839 COX17Q14061 63 aa13.1□□□□□ -0.31
CLN3-250ENST00000636839 NAA38Q9BRA0 125 aaKnown RBP13.1□□□□□ -0.31
CLN3-250ENST00000636839 TRBV30A0A0K0K1B3 111 aa13.1□□□□□ -0.31
CLN3-250ENST00000636839 C21orf62-AS1Q17RA5 79 aa13.1□□□□□ -0.31
CLN3-250ENST00000636839 SND1-IT1Q9HBX3 110 aa13.1□□□□□ -0.31
CLN3-250ENST00000636839 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.08□□□□□ -0.31
CLN3-250ENST00000636839 A0A1B0GWB2 263 aa13.08□□□□□ -0.31
CLN3-250ENST00000636839 CARD19Q96LW7 228 aa13.08□□□□□ -0.31
CLN3-250ENST00000636839 TMEM238LA0A1B0GVL6 79 aa13.08□□□□□ -0.32
CLN3-250ENST00000636839 A6NJY4 79 aa13.08□□□□□ -0.32
CLN3-250ENST00000636839 Q8NDZ9 215 aa13.07□□□□□ -0.32
CLN3-250ENST00000636839 XAGE1AQ9HD64 81 aa13.07□□□□□ -0.32
CLN3-250ENST00000636839 PRR3P79522 188 aaKnown RBP13.06□□□□□ -0.32
CLN3-250ENST00000636839 Q6ZRP5 223 aa13.05□□□□□ -0.32
CLN3-250ENST00000636839 GAGE2EQ4V326 116 aa13.05□□□□□ -0.32
CLN3-250ENST00000636839 C1orf134Q5TEV5 83 aa13.05□□□□□ -0.32
CLN3-250ENST00000636839 GAGE2DQ9UEU5 116 aa13.05□□□□□ -0.32
CLN3-250ENST00000636839 F8WDY8 70 aa13.04□□□□□ -0.32
CLN3-250ENST00000636839 DNAH6Q9C0G6 4158 aa13.04□□□□□ -0.32
CLN3-250ENST00000636839 FUSP35637 526 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLN3-250ENST00000636839 IGKV2-28A0A075B6P5 120 aa13.03□□□□□ -0.32
CLN3-250ENST00000636839 IGKV2D-28P01615 120 aa13.03□□□□□ -0.32
CLN3-250ENST00000636839 NDUFC2-KCTD14E9PQ53 114 aa13.02□□□□□ -0.33
CLN3-250ENST00000636839 H7C2G1 150 aa13.02□□□□□ -0.33
CLN3-250ENST00000636839 UBE2V1Q13404 147 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms