RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 Q6ZRP5 223 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 Q6ZTC4 211 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 C11orf45Q8TAV5 145 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 TRBV6-4A0A1B0GX49 114 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 TRAV22A0A0B4J277 110 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 K7EQG2 157 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 IGF2RP11717 2491 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 LINC00167Q96N53 147 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 COL12A1Q99715 3063 aa4.8□□□□□ -1.64
SCN1A-213ENST00000636759 HIGD2AQ9BW72 106 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 LOC110117498A0A087WWA1 95 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 UBE2AP49459 152 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 ZNF843Q8N446 348 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 UBE2E2Q96LR5 201 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 IGKV3OR2-268A0A0C4DH90 116 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 M0R378 163 aa4.79□□□□□ -1.64
SCN1A-213ENST00000636759 ANKHD1Q8IWZ3 2542 aaKnown RBP4.79□□□□□ -1.64
SCN1A-213ENST00000636759 CMYA5Q8N3K9 4069 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 A8MUN3 132 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 IGHV3-11P01762 117 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 C1orf64Q8NEQ6 169 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 LINC00588Q9Y4M8 146 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 PTPRZ1P23471 2315 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-213ENST00000636759 CHKB-CPT1BH3BT56 60 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 LINC00269Q8N2A0 174 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 C11orf44Q8N8P7 122 aa4.78□□□□□ -1.64
SCN1A-213ENST00000636759 CACNA1AO00555 2505 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 K7EQD1 137 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 SYCNQ0VAF6 134 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 AKAP6Q13023 2319 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 ZNF73O43830 326 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-213ENST00000636759 LY6G6DO95868 133 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 SPTBN2O15020 2390 aa4.77□□□□□ -1.65
SCN1A-213ENST00000636759 H3BS24 57 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 M0R2N4 97 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 SPTBN4Q9H254 2564 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 HIVEP3Q5T1R4 2406 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 IGHV3-53P01767 116 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 C5orf56Q8N8D9 126 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 FBN2P35556 2912 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 C6orf99Q4VX62 202 aa4.76□□□□□ -1.65
SCN1A-213ENST00000636759 IGHV4-61A0A0C4DH41 118 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 PRB2P02812 416 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-213ENST00000636759 CD164L2Q6UWJ8 174 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 Q6ZSN1 163 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 LINC01356Q8N9X3 169 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 CCL19Q99731 98 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 ATRXP46100 2492 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 CREBBPQ92793 2442 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 OCR1Q9BZK8 76 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 CDC42SE2Q9NRR3 84 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 COL6A6A6NMZ7 2263 aa4.75□□□□□ -1.65
SCN1A-213ENST00000636759 A0A096LNT2 108 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 MUC7Q8TAX7 377 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 C2CD3Q4AC94 2353 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 H3BQ85 93 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 CFAP46Q8IYW2 2715 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 PRR4Q16378 134 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 ATP11AUNQ6ZP68 121 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 Q8N9L7 120 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 ANK2Q01484 3957 aa4.74□□□□□ -1.65
SCN1A-213ENST00000636759 USMG5Q96IX5 58 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 IGHV4-30-2A0A087WSY4 118 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 TRBV6-8A0A0A6YYG3 113 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 HCG22E2RYF7 251 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 NANOS2P60321 138 aaKnown RBP4.73□□□□□ -1.65
SCN1A-213ENST00000636759 LINC00575Q6W349 94 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 UTP20O75691 2785 aaKnown RBP4.73□□□□□ -1.65
SCN1A-213ENST00000636759 C9orf66Q5T8R8 295 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 SPATA3Q8NHX4 192 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 IGSF10Q6WRI0 2623 aa4.73□□□□□ -1.65
SCN1A-213ENST00000636759 MXRA5Q9NR99 2828 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 Q6ZQY7 126 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 UBR5O95071 2799 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-213ENST00000636759 A6NED7 52 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 A8MU10 97 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 C8orf87E5RJ46 101 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 PSCAO43653 123 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 PRR3P79522 188 aaKnown RBP4.72□□□□□ -1.65
SCN1A-213ENST00000636759 CELA1Q9UNI1 258 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 SPTA1P02549 2419 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 A6NDX4 124 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 DSCR9P59020 149 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 FAM30AQ9NZY2 134 aa4.72□□□□□ -1.65
SCN1A-213ENST00000636759 C16orf90A8MZG2 172 aa4.71□□□□□ -1.65
SCN1A-213ENST00000636759 IGHV4-38-2P0DP08 117 aa4.71□□□□□ -1.65
SCN1A-213ENST00000636759 C7orf65Q6ZTY9 151 aa4.71□□□□□ -1.65
SCN1A-213ENST00000636759 LINC01006Q8NI28 216 aa4.71□□□□□ -1.65
SCN1A-213ENST00000636759 PKD1L2Q7Z442 2459 aa4.71□□□□□ -1.65
SCN1A-213ENST00000636759 MSMBP08118 114 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 Q5VV11 94 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 LIMD2Q9BT23 127 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 PRR15LQ9BU68 103 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 CHD8Q9HCK8 2581 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 LCA10Q71F78 164 aa4.71□□□□□ -1.66
SCN1A-213ENST00000636759 PHF5AQ7RTV0 110 aaKnown RBP4.71□□□□□ -1.66
SCN1A-213ENST00000636759 PIEZO1Q92508 2521 aa4.7□□□□□ -1.66
SCN1A-213ENST00000636759 H3BUA1 57 aa4.7□□□□□ -1.66
SCN1A-213ENST00000636759 IGLV1-40P01703 118 aa4.7□□□□□ -1.66
SCN1A-213ENST00000636759 IGKV4-1P06312 121 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms