RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SS18Q15532 418 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 LINC00269Q8N2A0 174 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 X6R8D5 127 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 OTOGQ6ZRI0 2925 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 LY6G6DO95868 133 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 PRR3P79522 188 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 A0A087WYN8 130 aa8.98□□□□□ -0.97
CCDC88A-214ENST00000621814 NDUFV3P56181 108 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-214ENST00000621814 DNAL4O96015 105 aa8.98□□□□□ -0.97
CCDC88A-214ENST00000621814 PRO0255Q9UI72 69 aa8.98□□□□□ -0.97
CCDC88A-214ENST00000621814 ATRQ13535 2644 aa8.97□□□□□ -0.97
CCDC88A-214ENST00000621814 INAFM1C9JVW0 142 aa8.97□□□□□ -0.97
CCDC88A-214ENST00000621814 ANGP03950 147 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-214ENST00000621814 SLPIP03973 132 aa8.97□□□□□ -0.97
CCDC88A-214ENST00000621814 GAGE2AQ6NT46 116 aa8.97□□□□□ -0.97
CCDC88A-214ENST00000621814 KIR2DL5BQ8NHK3 375 aa8.96□□□□□ -0.97
CCDC88A-214ENST00000621814 LINC01600Q96MT4 127 aa8.96□□□□□ -0.97
CCDC88A-214ENST00000621814 TRACP01848 142 aa8.96□□□□□ -0.98
CCDC88A-214ENST00000621814 IBA57-AS1B1ANH7 110 aa8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 RPL28P46779 137 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 TRRAPQ9Y4A5 3859 aa8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 B5MCH6 92 aa8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 NHLRC4P0CG21 123 aaPredicted RBP8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 C9orf116Q5BN46 136 aaPredicted RBP8.95□□□□□ -0.98
CCDC88A-214ENST00000621814 LECT2O14960 151 aa8.94□□□□□ -0.98
CCDC88A-214ENST00000621814 MALP21145 153 aa8.94□□□□□ -0.98
CCDC88A-214ENST00000621814 LINC00526Q96FQ7 95 aa8.94□□□□□ -0.98
CCDC88A-214ENST00000621814 C9orf129Q5T035 196 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-214ENST00000621814 DAD1P61803 113 aa8.93□□□□□ -0.98
CCDC88A-214ENST00000621814 IGHV4-28A0A0C4DH34 117 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 CCDC179H3BU77 68 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 DEFB121Q5J5C9 76 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 SMCR5Q8TEV8 140 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 C14orf132Q9NPU4 83 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 C22orf24Q9Y442 160 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 SS18L2Q9UHA2 77 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 CELA1Q9UNI1 258 aa8.92□□□□□ -0.98
CCDC88A-214ENST00000621814 CFAP161Q6P656 301 aa8.91□□□□□ -0.98
CCDC88A-214ENST00000621814 CHCHD10Q8WYQ3 142 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-214ENST00000621814 FAM240AA0A1B0GVK7 77 aa8.91□□□□□ -0.98
CCDC88A-214ENST00000621814 REG3AQ06141 175 aa8.91□□□□□ -0.98
CCDC88A-214ENST00000621814 C9orf66Q5T8R8 295 aa8.9□□□□□ -0.98
CCDC88A-214ENST00000621814 A0A1B0GUV1 79 aa8.9□□□□□ -0.99
CCDC88A-214ENST00000621814 LINC00612Q8N6U2 182 aa8.9□□□□□ -0.99
CCDC88A-214ENST00000621814 NCR3O14931 201 aa8.89□□□□□ -0.99
CCDC88A-214ENST00000621814 C3orf56Q8N813 242 aa8.89□□□□□ -0.99
CCDC88A-214ENST00000621814 SMIM9A6NGZ8 99 aa8.89□□□□□ -0.99
CCDC88A-214ENST00000621814 Q8IZM0 81 aa8.88□□□□□ -0.99
CCDC88A-214ENST00000621814 C6orf223Q8N319 242 aa8.88□□□□□ -0.99
CCDC88A-214ENST00000621814 FAM236AA0A1B0GUQ0 79 aa8.88□□□□□ -0.99
CCDC88A-214ENST00000621814 FAM236BA0A1B0GV22 79 aa8.88□□□□□ -0.99
CCDC88A-214ENST00000621814 LYRM9A8MSI8 78 aa8.87□□□□□ -0.99
CCDC88A-214ENST00000621814 H0YGX0 51 aa8.87□□□□□ -0.99
CCDC88A-214ENST00000621814 ACYP1P07311 99 aa8.87□□□□□ -0.99
CCDC88A-214ENST00000621814 INAFM2P0DMQ5 153 aa8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 APOC4P55056 127 aa8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 Q6Q795 121 aa8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 CD164L2Q6UWJ8 174 aa8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 KLK12Q9UKR0 248 aa8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 NSD1Q96L73 2696 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-214ENST00000621814 TEP1Q99973 2627 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-214ENST00000621814 MRPL23Q16540 153 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-214ENST00000621814 C10orf25Q5T742 122 aa8.84□□□□□ -0.99
CCDC88A-214ENST00000621814 KIAA0087Q14695 138 aa8.84□□□□□ -0.99
CCDC88A-214ENST00000621814 UNQ6190/PRO20217Q6UXQ8 127 aa8.84□□□□□ -0.99
CCDC88A-214ENST00000621814 HIVEP1P15822 2718 aa8.84□□□□□ -0.99
CCDC88A-214ENST00000621814 LINC00643Q86TS7 51 aa8.83□□□□□ -1
CCDC88A-214ENST00000621814 S100A7L2Q5SY68 101 aa8.83□□□□□ -1
CCDC88A-214ENST00000621814 SDIM1Q6ZPB5 146 aa8.83□□□□□ -1
CCDC88A-214ENST00000621814 PPDPFQ9H3Y8 114 aa8.83□□□□□ -1
CCDC88A-214ENST00000621814 IGKV3D-7A0A0C4DH55 119 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 SPART-AS1P0CW21 52 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 IGHV4-30-4P0DP06 118 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 ORMDL1Q9P0S3 153 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 Q8NAQ8 132 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 Q8NDZ9 215 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 TRBV7-7A0A0K0K1E9 115 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 SPAG11BQ08648 103 aa8.82□□□□□ -1
CCDC88A-214ENST00000621814 C6orf99Q4VX62 202 aa8.81□□□□□ -1
CCDC88A-214ENST00000621814 NANOS2P60321 138 aaKnown RBP8.81□□□□□ -1
CCDC88A-214ENST00000621814 RETNQ9HD89 108 aa8.8□□□□□ -1
CCDC88A-214ENST00000621814 KMT2BQ9UMN6 2715 aaPredicted RBP8.8□□□□□ -1
CCDC88A-214ENST00000621814 CYSRT1A8MQ03 144 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 TMEM126AQ9H061 195 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 LINC00846Q9NV44 126 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 CXCL5P42830 114 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 XAGE1AQ9HD64 81 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 PKD1L1Q8TDX9 2849 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 MIFP14174 115 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 RPL18AQ02543 176 aaKnown RBP8.79□□□□□ -1
CCDC88A-214ENST00000621814 OXLD1Q5BKU9 147 aa8.79□□□□□ -1
CCDC88A-214ENST00000621814 Q8N814 137 aa8.78□□□□□ -1
CCDC88A-214ENST00000621814 KLK5Q9Y337 293 aaPredicted RBP8.77□□□□□ -1
CCDC88A-214ENST00000621814 HIGD2BQ4VC39 106 aa8.77□□□□□ -1.01
CCDC88A-214ENST00000621814 LELP1Q5T871 98 aa8.77□□□□□ -1.01
CCDC88A-214ENST00000621814 COX17Q14061 63 aa8.76□□□□□ -1.01
CCDC88A-214ENST00000621814 A0A087WVE0 104 aa8.75□□□□□ -1.01
CCDC88A-214ENST00000621814 ENHOQ6UWT2 76 aa8.75□□□□□ -1.01
CCDC88A-214ENST00000621814 LYPD5Q6UWN5 251 aa8.74□□□□□ -1.01
CCDC88A-214ENST00000621814 IMUPQ9GZP8 106 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms