RNA–Protein interactions for RNA: ENST00000612509.4

SEMA3B-211, Transcript of semaphorin 3B, humanhuman

TSL 5

Gene SEMA3B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-211ENST00000612509 PDZD11Q5EBL8 140 aa11.35□□□□□ -0.59
SEMA3B-211ENST00000612509 SMIM1B2RUZ4 78 aa11.33□□□□□ -0.6
SEMA3B-211ENST00000612509 HNRNPA3P51991 378 aaKnown RBP11.33□□□□□ -0.6
SEMA3B-211ENST00000612509 CHCHD1Q96BP2 118 aaKnown RBP11.33□□□□□ -0.6
SEMA3B-211ENST00000612509 ATP5LO75964 103 aa11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 TRGC2P03986 189 aa11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 IGLC3P0DOY3 106 aa11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 CKS1BP61024 79 aa11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 Q6ZRP5 223 aa11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 DMBT1Q9UGM3 2413 aaPredicted RBP11.32□□□□□ -0.6
SEMA3B-211ENST00000612509 A0A1W2PNN7 141 aa11.31□□□□□ -0.6
SEMA3B-211ENST00000612509 NDUFA6P56556 154 aa11.31□□□□□ -0.6
SEMA3B-211ENST00000612509 C9orf116Q5BN46 136 aaPredicted RBP11.31□□□□□ -0.6
SEMA3B-211ENST00000612509 C6orf226Q5I0X4 101 aa11.31□□□□□ -0.6
SEMA3B-211ENST00000612509 FAT3Q8TDW7 4589 aa11.31□□□□□ -0.6
SEMA3B-211ENST00000612509 SPINK8P0C7L1 97 aa11.29□□□□□ -0.6
SEMA3B-211ENST00000612509 CXCL5P42830 114 aa11.29□□□□□ -0.6
SEMA3B-211ENST00000612509 PRR3P79522 188 aaKnown RBP11.29□□□□□ -0.6
SEMA3B-211ENST00000612509 GAGE2EQ4V326 116 aa11.29□□□□□ -0.6
SEMA3B-211ENST00000612509 GAGE2DQ9UEU5 116 aa11.29□□□□□ -0.6
SEMA3B-211ENST00000612509 COLCA2A8K830 154 aa11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 NDUFC2-KCTD14E9PQ53 114 aa11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 H3BRM9 83 aa11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 BAGE3Q86Y29 109 aa11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 COX7B2Q8TF08 81 aa11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 LRP1Q07954 4544 aaKnown RBP11.28□□□□□ -0.6
SEMA3B-211ENST00000612509 F8VRH5 84 aa11.27□□□□□ -0.61
SEMA3B-211ENST00000612509 HSBP1O75506 76 aa11.27□□□□□ -0.61
SEMA3B-211ENST00000612509 ZNF22P17026 224 aaPredicted RBP11.27□□□□□ -0.61
SEMA3B-211ENST00000612509 FAM168BA1KXE4 195 aa11.25□□□□□ -0.61
SEMA3B-211ENST00000612509 KRTAP29-1A8MX34 341 aaPredicted RBP11.25□□□□□ -0.61
SEMA3B-211ENST00000612509 HERC1Q15751 4861 aa11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 C11orf86A6NJI1 115 aa11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 LINC00310P59036 64 aa11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 PHF5AQ7RTV0 110 aaKnown RBP11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 FAM19A5Q7Z5A7 132 aaPredicted RBP11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 IFI27L1Q96BM0 104 aa11.24□□□□□ -0.61
SEMA3B-211ENST00000612509 IGLV5-39A0A0G2JS06 123 aa11.23□□□□□ -0.61
SEMA3B-211ENST00000612509 J3QL48 77 aa11.23□□□□□ -0.61
SEMA3B-211ENST00000612509 SCO1O75880 301 aa11.23□□□□□ -0.61
SEMA3B-211ENST00000612509 C9orf129Q5T035 196 aaKnown RBP11.23□□□□□ -0.61
SEMA3B-211ENST00000612509 FAM19A2Q8N3H0 131 aa11.23□□□□□ -0.61
SEMA3B-211ENST00000612509 SERF1AO75920 110 aa11.22□□□□□ -0.61
SEMA3B-211ENST00000612509 CHTOPQ9Y3Y2 248 aaKnown RBP11.22□□□□□ -0.61
SEMA3B-211ENST00000612509 TRAV12-1A0A0B4J245 112 aa11.21□□□□□ -0.61
SEMA3B-211ENST00000612509 OXTP01178 125 aa11.2□□□□□ -0.62
SEMA3B-211ENST00000612509 TMEM170BQ5T4T1 132 aa11.2□□□□□ -0.62
SEMA3B-211ENST00000612509 KRTAP7-1Q8IUC3 87 aa11.2□□□□□ -0.62
SEMA3B-211ENST00000612509 M0QXV9 152 aa11.19□□□□□ -0.62
SEMA3B-211ENST00000612509 XAGE1AQ9HD64 81 aa11.18□□□□□ -0.62
SEMA3B-211ENST00000612509 LEPROTL1O95214 131 aa11.17□□□□□ -0.62
SEMA3B-211ENST00000612509 PSORS1C2Q9UIG4 136 aa11.17□□□□□ -0.62
SEMA3B-211ENST00000612509 NUPR1O60356 82 aa11.16□□□□□ -0.62
SEMA3B-211ENST00000612509 SERTAD4-AS1Q5TG53 156 aa11.15□□□□□ -0.62
SEMA3B-211ENST00000612509 H0Y8G0 127 aa11.14□□□□□ -0.63
SEMA3B-211ENST00000612509 KRTAP11-1Q8IUC1 163 aa11.14□□□□□ -0.63
SEMA3B-211ENST00000612509 TMEM223A0PJW6 202 aa11.13□□□□□ -0.63
SEMA3B-211ENST00000612509 ODF1Q14990 250 aa11.13□□□□□ -0.63
SEMA3B-211ENST00000612509 C1orf137Q5JT78 98 aa11.13□□□□□ -0.63
SEMA3B-211ENST00000612509 SPINK6Q6UWN8 80 aa11.13□□□□□ -0.63
SEMA3B-211ENST00000612509 HSPB8Q9UJY1 196 aa11.13□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BKO60814 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BJP06899 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BOP23527 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BBP33778 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BDP58876 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BCP62807 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 UBE2BP63146 152 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST2H2BEQ16778 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BHQ93079 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BNQ99877 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 HIST1H2BMQ99879 126 aa11.12□□□□□ -0.63
SEMA3B-211ENST00000612509 SFTA2Q6UW10 78 aa11.11□□□□□ -0.63
SEMA3B-211ENST00000612509 ERG28Q9UKR5 140 aa11.11□□□□□ -0.63
SEMA3B-211ENST00000612509 FABP4P15090 132 aa11.1□□□□□ -0.63
SEMA3B-211ENST00000612509 PFN2P35080 140 aa11.1□□□□□ -0.63
SEMA3B-211ENST00000612509 SRSF9Q13242 221 aaKnown RBP eCLIP11.1□□□□□ -0.63
SEMA3B-211ENST00000612509 ZNF625Q96I27 306 aaPredicted RBP11.1□□□□□ -0.63
SEMA3B-211ENST00000612509 C22orf24Q9Y442 160 aa11.1□□□□□ -0.63
SEMA3B-211ENST00000612509 TP73-AS1Q9UF72 201 aa11.08□□□□□ -0.64
SEMA3B-211ENST00000612509 IGLV7-43P04211 117 aa11.07□□□□□ -0.64
SEMA3B-211ENST00000612509 MT1HL1P0DM35 61 aa11.07□□□□□ -0.64
SEMA3B-211ENST00000612509 PLA2G2DQ9UNK4 145 aa11.07□□□□□ -0.64
SEMA3B-211ENST00000612509 PLNP26678 52 aa11.06□□□□□ -0.64
SEMA3B-211ENST00000612509 COX17Q14061 63 aa11.06□□□□□ -0.64
SEMA3B-211ENST00000612509 LBHQ53QV2 105 aaPredicted RBP11.06□□□□□ -0.64
SEMA3B-211ENST00000612509 MRPL55Q7Z7F7 128 aaKnown RBP11.06□□□□□ -0.64
SEMA3B-211ENST00000612509 REG3GQ6UW15 175 aa11.05□□□□□ -0.64
SEMA3B-211ENST00000612509 TNXBP22105 4242 aa11.04□□□□□ -0.64
SEMA3B-211ENST00000612509 IGLV5-37A0A075B6J1 123 aa11.04□□□□□ -0.64
SEMA3B-211ENST00000612509 PMCHL2Q9BQD1 86 aa11.04□□□□□ -0.64
SEMA3B-211ENST00000612509 MAP1LC3CQ9BXW4 147 aa11.04□□□□□ -0.64
SEMA3B-211ENST00000612509 SND1-IT1Q9HBX3 110 aa11.04□□□□□ -0.64
SEMA3B-211ENST00000612509 DPM2O94777 84 aa11.03□□□□□ -0.64
SEMA3B-211ENST00000612509 IGKCP01834 107 aa11.02□□□□□ -0.65
SEMA3B-211ENST00000612509 NKAPP1Q8N9T2 125 aa11.02□□□□□ -0.65
SEMA3B-211ENST00000612509 LINC01600Q96MT4 127 aa11.02□□□□□ -0.65
SEMA3B-211ENST00000612509 TSPEAR-AS2P59090 65 aa11.01□□□□□ -0.65
SEMA3B-211ENST00000612509 HERVK_113P61574 105 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms