RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MIEN1Q9BRT3 115 aa10.22□□□□□ -0.77
UPF1-206ENST00000598471 F8WDY8 70 aa10.21□□□□□ -0.77
UPF1-206ENST00000598471 KIAA0087Q14695 138 aa10.21□□□□□ -0.77
UPF1-206ENST00000598471 C2orf48Q96LS8 159 aa10.21□□□□□ -0.77
UPF1-206ENST00000598471 Q6ZRN7 208 aaPredicted RBP10.2□□□□□ -0.78
UPF1-206ENST00000598471 ZNF625Q96I27 306 aaPredicted RBP10.2□□□□□ -0.78
UPF1-206ENST00000598471 LINC00587B1AMM8 73 aa10.19□□□□□ -0.78
UPF1-206ENST00000598471 HNRNPA3P51991 378 aaKnown RBP10.19□□□□□ -0.78
UPF1-206ENST00000598471 NTN5Q8WTR8 489 aaPredicted RBP10.19□□□□□ -0.78
UPF1-206ENST00000598471 CAMK2N2Q96S95 79 aa10.19□□□□□ -0.78
UPF1-206ENST00000598471 LECT2O14960 151 aa10.18□□□□□ -0.78
UPF1-206ENST00000598471 MEIG1Q5JSS6 88 aa10.18□□□□□ -0.78
UPF1-206ENST00000598471 C2orf82Q6UX34 121 aa10.18□□□□□ -0.78
UPF1-206ENST00000598471 DNAH6Q9C0G6 4158 aa10.18□□□□□ -0.78
UPF1-206ENST00000598471 KMT2AQ03164 3969 aa10.17□□□□□ -0.78
UPF1-206ENST00000598471 A0A0J9YXY3 114 aa10.17□□□□□ -0.78
UPF1-206ENST00000598471 CIRBPQ14011 172 aaKnown RBP10.17□□□□□ -0.78
UPF1-206ENST00000598471 LINC00526Q96FQ7 95 aa10.17□□□□□ -0.78
UPF1-206ENST00000598471 HIGD1BQ9P298 99 aa10.17□□□□□ -0.78
UPF1-206ENST00000598471 TP73-AS1Q9UF72 201 aa10.17□□□□□ -0.78
UPF1-206ENST00000598471 TMEM238C9JI98 176 aa10.16□□□□□ -0.78
UPF1-206ENST00000598471 TRBV30A0A0K0K1B3 111 aa10.15□□□□□ -0.78
UPF1-206ENST00000598471 TIMM17BO60830 172 aa10.15□□□□□ -0.78
UPF1-206ENST00000598471 SYCNQ0VAF6 134 aa10.15□□□□□ -0.78
UPF1-206ENST00000598471 LRCOL1A6NCL2 159 aa10.14□□□□□ -0.79
UPF1-206ENST00000598471 DDTP30046 118 aa10.14□□□□□ -0.79
UPF1-206ENST00000598471 UNQ6190/PRO20217Q6UXQ8 127 aa10.14□□□□□ -0.79
UPF1-206ENST00000598471 C2orf91Q6ZV80 131 aa10.14□□□□□ -0.79
UPF1-206ENST00000598471 CARD19Q96LW7 228 aa10.14□□□□□ -0.79
UPF1-206ENST00000598471 EREGO14944 169 aa10.13□□□□□ -0.79
UPF1-206ENST00000598471 WFDC2Q14508 124 aa10.13□□□□□ -0.79
UPF1-206ENST00000598471 ERG28Q9UKR5 140 aa10.13□□□□□ -0.79
UPF1-206ENST00000598471 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.12□□□□□ -0.79
UPF1-206ENST00000598471 LINC00158P58513 81 aa10.12□□□□□ -0.79
UPF1-206ENST00000598471 COX17Q14061 63 aa10.12□□□□□ -0.79
UPF1-206ENST00000598471 C10orf25Q5T742 122 aa10.12□□□□□ -0.79
UPF1-206ENST00000598471 Q6ZRU5 148 aa10.12□□□□□ -0.79
UPF1-206ENST00000598471 SPANXB1Q9NS25 103 aaPredicted RBP10.12□□□□□ -0.79
UPF1-206ENST00000598471 A0A087WTM6 91 aa10.11□□□□□ -0.79
UPF1-206ENST00000598471 PCP4L1A6NKN8 68 aa10.11□□□□□ -0.79
UPF1-206ENST00000598471 SMIM13P0DJ93 91 aa10.11□□□□□ -0.79
UPF1-206ENST00000598471 GCSHP23434 173 aa10.11□□□□□ -0.79
UPF1-206ENST00000598471 SRSF9Q13242 221 aaKnown RBP eCLIP10.11□□□□□ -0.79
UPF1-206ENST00000598471 RNF151Q2KHN1 245 aa10.11□□□□□ -0.79
UPF1-206ENST00000598471 PFN2P35080 140 aa10.1□□□□□ -0.79
UPF1-206ENST00000598471 CNBPP62633 177 aaKnown RBP10.1□□□□□ -0.79
UPF1-206ENST00000598471 Q6ZVH6 145 aa10.1□□□□□ -0.79
UPF1-206ENST00000598471 Q8N814 137 aa10.1□□□□□ -0.79
UPF1-206ENST00000598471 HIST1H4GQ99525 98 aa10.1□□□□□ -0.79
UPF1-206ENST00000598471 C6orf48Q9UBA6 75 aa10.1□□□□□ -0.79
UPF1-206ENST00000598471 A0A0U1RRA0 63 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 HSD52Q0P140 79 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 TAL2Q16559 108 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 COPS9Q8WXC6 57 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 SPANXDQ9BXN6 97 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 SPANXCQ9NY87 97 aa10.09□□□□□ -0.79
UPF1-206ENST00000598471 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.08□□□□□ -0.8
UPF1-206ENST00000598471 RTL8CO15255 209 aa10.08□□□□□ -0.8
UPF1-206ENST00000598471 LITAFQ99732 161 aa10.08□□□□□ -0.8
UPF1-206ENST00000598471 PKIGQ9Y2B9 76 aa10.08□□□□□ -0.8
UPF1-206ENST00000598471 CTAG1AP78358 180 aa10.07□□□□□ -0.8
UPF1-206ENST00000598471 C9orf116Q5BN46 136 aaPredicted RBP10.07□□□□□ -0.8
UPF1-206ENST00000598471 MIR7-3HGQ8N6C7 128 aa10.07□□□□□ -0.8
UPF1-206ENST00000598471 SLPIP03973 132 aa10.06□□□□□ -0.8
UPF1-206ENST00000598471 IFITM1P13164 125 aa10.06□□□□□ -0.8
UPF1-206ENST00000598471 ADAMTSL4-AS1Q5T5F5 129 aa10.06□□□□□ -0.8
UPF1-206ENST00000598471 NDUFC2-KCTD14E9PQ53 114 aa10.05□□□□□ -0.8
UPF1-206ENST00000598471 M0R143 59 aa10.05□□□□□ -0.8
UPF1-206ENST00000598471 TNP2Q05952 138 aa10.05□□□□□ -0.8
UPF1-206ENST00000598471 DAND5Q8N907 189 aa10.05□□□□□ -0.8
UPF1-206ENST00000598471 DNAH10Q8IVF4 4471 aa10.04□□□□□ -0.8
UPF1-206ENST00000598471 LOC107984640A0A0U1RRK4 108 aa10.03□□□□□ -0.8
UPF1-206ENST00000598471 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
UPF1-206ENST00000598471 LINC00336Q6ZUF6 198 aa10.03□□□□□ -0.8
UPF1-206ENST00000598471 CEND1Q8N111 149 aa10.03□□□□□ -0.8
UPF1-206ENST00000598471 DNAH2Q9P225 4427 aa10.02□□□□□ -0.8
UPF1-206ENST00000598471 TMEM238LA0A1B0GVL6 79 aa10.02□□□□□ -0.81
UPF1-206ENST00000598471 A6NJY4 79 aa10.02□□□□□ -0.81
UPF1-206ENST00000598471 PTTG1IPP53801 180 aa10.02□□□□□ -0.81
UPF1-206ENST00000598471 RPL24P83731 157 aaKnown RBP10.02□□□□□ -0.81
UPF1-206ENST00000598471 RPL18AQ02543 176 aaKnown RBP10.02□□□□□ -0.81
UPF1-206ENST00000598471 LINC00308Q8TCZ7 52 aa10.02□□□□□ -0.81
UPF1-206ENST00000598471 PPDPFQ9H3Y8 114 aa10.02□□□□□ -0.81
UPF1-206ENST00000598471 NPC2P61916 151 aa10.01□□□□□ -0.81
UPF1-206ENST00000598471 MUSTN1Q8IVN3 82 aa10.01□□□□□ -0.81
UPF1-206ENST00000598471 C9orf163Q8N9P6 203 aa10.01□□□□□ -0.81
UPF1-206ENST00000598471 SND1-IT1Q9HBX3 110 aa10.01□□□□□ -0.81
UPF1-206ENST00000598471 HINT1P49773 126 aaPredicted RBP10□□□□□ -0.81
UPF1-206ENST00000598471 IGLV5-52A0A0A0MRZ9 124 aa9.99□□□□□ -0.81
UPF1-206ENST00000598471 GAGE2EQ4V326 116 aa9.99□□□□□ -0.81
UPF1-206ENST00000598471 Q6ZRP5 223 aa9.99□□□□□ -0.81
UPF1-206ENST00000598471 GAGE2DQ9UEU5 116 aa9.99□□□□□ -0.81
UPF1-206ENST00000598471 BVES-AS1Q5T3Y7 98 aa9.98□□□□□ -0.81
UPF1-206ENST00000598471 DNAH17Q9UFH2 4485 aa9.98□□□□□ -0.81
UPF1-206ENST00000598471 LOC107984156A0A0G2JMH3 177 aa9.97□□□□□ -0.81
UPF1-206ENST00000598471 GAGE2BQ13066 116 aa9.97□□□□□ -0.81
UPF1-206ENST00000598471 BATFQ16520 125 aa9.97□□□□□ -0.81
UPF1-206ENST00000598471 SOSTDC1Q6X4U4 206 aa9.97□□□□□ -0.81
UPF1-206ENST00000598471 ARL17AQ8IVW1 177 aa9.97□□□□□ -0.81
UPF1-206ENST00000598471 FXYD2P54710 66 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms