RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TSPEAR-AS2P59090 65 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 LINC01620Q4KN68 170 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 Q8IZM0 81 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 PLEKHB2Q96CS7 222 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 LINC00526Q96FQ7 95 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 VAMP8Q9BV40 100 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 KIAA1109Q2LD37 5005 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 J3QQQ9 107 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 ZNF561-AS1K7EIQ3 104 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 PRSS2P07478 247 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 KRTAP10-1P60331 282 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 C6orf226Q5I0X4 101 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 PAM16Q9Y3D7 125 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 C14orf177Q52M58 125 aa9.75□□□□□ -0.85
TRIM28-207ENST00000597136 SLPIP03973 132 aa9.73□□□□□ -0.85
TRIM28-207ENST00000597136 GCSHP23434 173 aa9.73□□□□□ -0.85
TRIM28-207ENST00000597136 NMUP48645 174 aa9.73□□□□□ -0.85
TRIM28-207ENST00000597136 SPATA45Q537H7 98 aa9.73□□□□□ -0.85
TRIM28-207ENST00000597136 C2orf82Q6UX34 121 aa9.73□□□□□ -0.85
TRIM28-207ENST00000597136 LGALS3P17931 250 aaKnown RBP9.72□□□□□ -0.85
TRIM28-207ENST00000597136 CKS1BP61024 79 aa9.72□□□□□ -0.85
TRIM28-207ENST00000597136 S100A12P80511 92 aa9.72□□□□□ -0.85
TRIM28-207ENST00000597136 C2orf48Q96LS8 159 aa9.72□□□□□ -0.85
TRIM28-207ENST00000597136 C12orf57Q99622 126 aa9.72□□□□□ -0.85
TRIM28-207ENST00000597136 ZNF625Q96I27 306 aaPredicted RBP9.71□□□□□ -0.85
TRIM28-207ENST00000597136 TTTY13Q9BZ97 58 aa9.71□□□□□ -0.85
TRIM28-207ENST00000597136 NDUFA12Q9UI09 145 aa9.71□□□□□ -0.85
TRIM28-207ENST00000597136 APOBP04114 4563 aaKnown RBP9.71□□□□□ -0.86
TRIM28-207ENST00000597136 F8WDY8 70 aa9.71□□□□□ -0.86
TRIM28-207ENST00000597136 CXCL5P42830 114 aa9.71□□□□□ -0.86
TRIM28-207ENST00000597136 UNQ6190/PRO20217Q6UXQ8 127 aa9.71□□□□□ -0.86
TRIM28-207ENST00000597136 PCP2Q8IVA1 136 aa9.71□□□□□ -0.86
TRIM28-207ENST00000597136 CAMK2N2Q96S95 79 aa9.71□□□□□ -0.86
TRIM28-207ENST00000597136 NDUFA1O15239 70 aa9.7□□□□□ -0.86
TRIM28-207ENST00000597136 C10orf25Q5T742 122 aa9.7□□□□□ -0.86
TRIM28-207ENST00000597136 LINC00518Q8N0U6 118 aa9.7□□□□□ -0.86
TRIM28-207ENST00000597136 MYMXA0A1B0GTQ4 84 aa9.69□□□□□ -0.86
TRIM28-207ENST00000597136 SYCNQ0VAF6 134 aa9.69□□□□□ -0.86
TRIM28-207ENST00000597136 FAM30AQ9NZY2 134 aa9.69□□□□□ -0.86
TRIM28-207ENST00000597136 DNAH8Q96JB1 4490 aa9.69□□□□□ -0.86
TRIM28-207ENST00000597136 ZNF815PA8K554 130 aa9.68□□□□□ -0.86
TRIM28-207ENST00000597136 CNBPP62633 177 aaKnown RBP9.68□□□□□ -0.86
TRIM28-207ENST00000597136 SFTA2Q6UW10 78 aa9.68□□□□□ -0.86
TRIM28-207ENST00000597136 Q6ZRU5 148 aa9.68□□□□□ -0.86
TRIM28-207ENST00000597136 COX8AP10176 69 aa9.67□□□□□ -0.86
TRIM28-207ENST00000597136 C14orf144Q96I85 54 aa9.67□□□□□ -0.86
TRIM28-207ENST00000597136 KRTAP17-1Q9BYP8 105 aa9.67□□□□□ -0.86
TRIM28-207ENST00000597136 RYR1P21817 5038 aa9.67□□□□□ -0.86
TRIM28-207ENST00000597136 CARD19Q96LW7 228 aa9.67□□□□□ -0.86
TRIM28-207ENST00000597136 HSPG2P98160 4391 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 TRBV30A0A0K0K1B3 111 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 XGP55808 180 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 HERV-K104P63124 156 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 HAMPP81172 84 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 C9orf163Q8N9P6 203 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 C6orf48Q9UBA6 75 aa9.66□□□□□ -0.86
TRIM28-207ENST00000597136 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-207ENST00000597136 C9orf116Q5BN46 136 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-207ENST00000597136 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
TRIM28-207ENST00000597136 A0A0J9YXY3 114 aa9.64□□□□□ -0.87
TRIM28-207ENST00000597136 CDK2AP2O75956 126 aa9.64□□□□□ -0.87
TRIM28-207ENST00000597136 RNF151Q2KHN1 245 aa9.64□□□□□ -0.87
TRIM28-207ENST00000597136 DLEU1O43261 78 aa9.63□□□□□ -0.87
TRIM28-207ENST00000597136 TP73-AS1Q9UF72 201 aa9.63□□□□□ -0.87
TRIM28-207ENST00000597136 SLC25A34Q6PIV7 304 aa9.63□□□□□ -0.87
TRIM28-207ENST00000597136 SDIM1Q6ZPB5 146 aa9.63□□□□□ -0.87
TRIM28-207ENST00000597136 SCGB1D4Q6XE38 83 aa9.62□□□□□ -0.87
TRIM28-207ENST00000597136 ERG28Q9UKR5 140 aa9.62□□□□□ -0.87
TRIM28-207ENST00000597136 HERC2O95714 4834 aa9.61□□□□□ -0.87
TRIM28-207ENST00000597136 Q6ZSA8 131 aa9.61□□□□□ -0.87
TRIM28-207ENST00000597136 PRO1933Q9H354 126 aa9.61□□□□□ -0.87
TRIM28-207ENST00000597136 LINC00587B1AMM8 73 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 PANO1I0J062 215 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 SMIM13P0DJ93 91 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 PFN2P35080 140 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 COX17Q14061 63 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 MEIG1Q5JSS6 88 aa9.6□□□□□ -0.87
TRIM28-207ENST00000597136 A0A0U1RRA0 63 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 TIMM17BO60830 172 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 TLX1NBP0CAT3 122 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 LINC00158P58513 81 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 CIRBPQ14011 172 aaKnown RBP9.58□□□□□ -0.88
TRIM28-207ENST00000597136 LITAFQ99732 161 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 UQCR10Q9UDW1 63 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 NDUFC2-KCTD14E9PQ53 114 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 ADAMTSL4-AS1Q5T5F5 129 aa9.58□□□□□ -0.88
TRIM28-207ENST00000597136 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-207ENST00000597136 LOC107984640A0A0U1RRK4 108 aa9.57□□□□□ -0.88
TRIM28-207ENST00000597136 TSTD3H0UI37 97 aa9.57□□□□□ -0.88
TRIM28-207ENST00000597136 CHTF8P0CG12 524 aa9.57□□□□□ -0.88
TRIM28-207ENST00000597136 C2orf91Q6ZV80 131 aa9.57□□□□□ -0.88
TRIM28-207ENST00000597136 SMR3BP02814 79 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-207ENST00000597136 Q6ZRP5 223 aa9.56□□□□□ -0.88
TRIM28-207ENST00000597136 MIEN1Q9BRT3 115 aa9.56□□□□□ -0.88
TRIM28-207ENST00000597136 TMEM238C9JI98 176 aa9.55□□□□□ -0.88
TRIM28-207ENST00000597136 RPL18AQ02543 176 aaKnown RBP9.55□□□□□ -0.88
TRIM28-207ENST00000597136 MIR7-3HGQ8N6C7 128 aa9.55□□□□□ -0.88
TRIM28-207ENST00000597136 DAND5Q8N907 189 aa9.55□□□□□ -0.88
TRIM28-207ENST00000597136 HIGD1BQ9P298 99 aa9.55□□□□□ -0.88
TRIM28-207ENST00000597136 SCXQ7RTU7 201 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms