RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 HERV-K104P63124 156 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 ZNF625Q96I27 306 aaPredicted RBP7.04□□□□□ -1.28
SS18-213ENST00000579640 CAMK2N2Q96S95 79 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 ZNF815PA8K554 130 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 DLEU1O43261 78 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 PCP2Q8IVA1 136 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 Q8N814 137 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 SYCNQ0VAF6 134 aa7.03□□□□□ -1.28
SS18-213ENST00000579640 C2orf82Q6UX34 121 aa7.03□□□□□ -1.28
SS18-213ENST00000579640 BOD1L2Q8IYS8 172 aa7.03□□□□□ -1.28
SS18-213ENST00000579640 LINC00526Q96FQ7 95 aa7.03□□□□□ -1.28
SS18-213ENST00000579640 HYDINQ4G0P3 5121 aa7.03□□□□□ -1.28
SS18-213ENST00000579640 TRBV30A0A0K0K1B3 111 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 LINC00587B1AMM8 73 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 CNBPP62633 177 aaKnown RBP7.02□□□□□ -1.29
SS18-213ENST00000579640 SLC25A34Q6PIV7 304 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 LINC00336Q6ZUF6 198 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 TTTY13Q9BZ97 58 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 DNAH2Q9P225 4427 aa7.02□□□□□ -1.29
SS18-213ENST00000579640 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.01□□□□□ -1.29
SS18-213ENST00000579640 TNP2Q05952 138 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 RNF151Q2KHN1 245 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 UNQ6190/PRO20217Q6UXQ8 127 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 C14orf144Q96I85 54 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 CARD19Q96LW7 228 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 Q6ZRU5 148 aa7.01□□□□□ -1.29
SS18-213ENST00000579640 A0A0J9YXY3 114 aa7□□□□□ -1.29
SS18-213ENST00000579640 C10orf25Q5T742 122 aa7□□□□□ -1.29
SS18-213ENST00000579640 SCGB1D4Q6XE38 83 aa7□□□□□ -1.29
SS18-213ENST00000579640 UQCR10Q9UDW1 63 aa7□□□□□ -1.29
SS18-213ENST00000579640 KMT2CQ8NEZ4 4911 aaKnown RBP6.99□□□□□ -1.29
SS18-213ENST00000579640 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.99□□□□□ -1.29
SS18-213ENST00000579640 SLPIP03973 132 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 CIRBPQ14011 172 aaKnown RBP6.99□□□□□ -1.29
SS18-213ENST00000579640 COX17Q14061 63 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 MEIG1Q5JSS6 88 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 C6orf48Q9UBA6 75 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 ERG28Q9UKR5 140 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 FRAS1Q86XX4 4008 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 TSTD3H0UI37 97 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 TIMM17BO60830 172 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 PKIGQ9Y2B9 76 aa6.99□□□□□ -1.29
SS18-213ENST00000579640 RYR2Q92736 4967 aa6.98□□□□□ -1.29
SS18-213ENST00000579640 DNAH17Q9UFH2 4485 aa6.98□□□□□ -1.29
SS18-213ENST00000579640 PRO1933Q9H354 126 aa6.98□□□□□ -1.29
SS18-213ENST00000579640 TMEM238C9JI98 176 aa6.97□□□□□ -1.29
SS18-213ENST00000579640 MIEN1Q9BRT3 115 aa6.97□□□□□ -1.29
SS18-213ENST00000579640 HIGD1BQ9P298 99 aa6.97□□□□□ -1.29
SS18-213ENST00000579640 TLX1NBP0CAT3 122 aa6.97□□□□□ -1.29
SS18-213ENST00000579640 C9orf163Q8N9P6 203 aa6.97□□□□□ -1.29
SS18-213ENST00000579640 SMIM13P0DJ93 91 aa6.96□□□□□ -1.3
SS18-213ENST00000579640 PFN2P35080 140 aa6.96□□□□□ -1.3
SS18-213ENST00000579640 LINC00158P58513 81 aa6.96□□□□□ -1.3
SS18-213ENST00000579640 C9orf116Q5BN46 136 aaPredicted RBP6.96□□□□□ -1.3
SS18-213ENST00000579640 IGLV5-52A0A0A0MRZ9 124 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 LOC107984640A0A0U1RRK4 108 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 NDUFC2-KCTD14E9PQ53 114 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 Q6ZVH6 145 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 SPANXB1Q9NS25 103 aaPredicted RBP6.95□□□□□ -1.3
SS18-213ENST00000579640 PGPEP1Q9NXJ5 209 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 TP73-AS1Q9UF72 201 aa6.95□□□□□ -1.3
SS18-213ENST00000579640 GCSHP23434 173 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 C2orf91Q6ZV80 131 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 LITAFQ99732 161 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 SPANXDQ9BXN6 97 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 SPANXCQ9NY87 97 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 A0A0U1RRA0 63 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 HNRNPA3P51991 378 aaKnown RBP6.94□□□□□ -1.3
SS18-213ENST00000579640 COPS9Q8WXC6 57 aa6.94□□□□□ -1.3
SS18-213ENST00000579640 ADAMTSL4-AS1Q5T5F5 129 aa6.93□□□□□ -1.3
SS18-213ENST00000579640 MIR7-3HGQ8N6C7 128 aa6.93□□□□□ -1.3
SS18-213ENST00000579640 IFITM1P13164 125 aa6.92□□□□□ -1.3
SS18-213ENST00000579640 RPL18AQ02543 176 aaKnown RBP6.92□□□□□ -1.3
SS18-213ENST00000579640 SRSF9Q13242 221 aaKnown RBP eCLIP6.92□□□□□ -1.3
SS18-213ENST00000579640 PTTG1IPP53801 180 aa6.92□□□□□ -1.3
SS18-213ENST00000579640 TAL2Q16559 108 aa6.92□□□□□ -1.3
SS18-213ENST00000579640 Q6ZRP5 223 aa6.92□□□□□ -1.3
SS18-213ENST00000579640 PPDPFQ9H3Y8 114 aa6.92□□□□□ -1.3
SS18-213ENST00000579640 FAT2Q9NYQ8 4349 aa6.91□□□□□ -1.3
SS18-213ENST00000579640 KRTAP10-2P60368 255 aa6.91□□□□□ -1.3
SS18-213ENST00000579640 DAND5Q8N907 189 aa6.91□□□□□ -1.3
SS18-213ENST00000579640 HIST1H4GQ99525 98 aa6.91□□□□□ -1.3
SS18-213ENST00000579640 HECTD4Q9Y4D8 3996 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 LOC107984156A0A0G2JMH3 177 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 A0A1B0GVY2 172 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 C16orf90A8MZG2 172 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 GAGE2EQ4V326 116 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 SDIM1Q6ZPB5 146 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 ARL17AQ8IVW1 177 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 SND1-IT1Q9HBX3 110 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 GAGE2DQ9UEU5 116 aa6.9□□□□□ -1.3
SS18-213ENST00000579640 DDTP30046 118 aa6.9□□□□□ -1.31
SS18-213ENST00000579640 HSD52Q0P140 79 aa6.9□□□□□ -1.31
SS18-213ENST00000579640 GAGE2BQ13066 116 aa6.9□□□□□ -1.31
SS18-213ENST00000579640 LINC00308Q8TCZ7 52 aa6.9□□□□□ -1.31
SS18-213ENST00000579640 LINC00474Q9P2X8 69 aa6.9□□□□□ -1.31
SS18-213ENST00000579640 A0A096LNI7 61 aa6.88□□□□□ -1.31
SS18-213ENST00000579640 FUSP35637 526 aaKnown RBP eCLIP6.88□□□□□ -1.31
SS18-213ENST00000579640 MUSTN1Q8IVN3 82 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms