RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	LINC00959	A0A1B0GUT2	108 aa		11.94	□□□□□ -0.5
VPS53-215	ENST00000573028	IGLV1-51	P01701	117 aa		11.94	□□□□□ -0.5
VPS53-215	ENST00000573028	NOTCH2	Q04721	2471 aa		11.93	□□□□□ -0.5
VPS53-215	ENST00000573028		A0A087WZ39	114 aa		11.93	□□□□□ -0.5
VPS53-215	ENST00000573028	OVOL2	Q9BRP0	275 aa		11.93	□□□□□ -0.5
VPS53-215	ENST00000573028	IBA57-AS1	B1ANH7	110 aa		11.92	□□□□□ -0.5
VPS53-215	ENST00000573028	PRR3	P79522	188 aa	Known RBP	11.92	□□□□□ -0.5
VPS53-215	ENST00000573028	ITPR2	Q14571	2701 aa		11.92	□□□□□ -0.5
VPS53-215	ENST00000573028	NCR3	O14931	201 aa		11.92	□□□□□ -0.5
VPS53-215	ENST00000573028	CMC4	P56277	68 aa	Predicted RBP	11.92	□□□□□ -0.5
VPS53-215	ENST00000573028	IGKV3D-7	A0A0C4DH55	119 aa		11.91	□□□□□ -0.5
VPS53-215	ENST00000573028	SDIM1	Q6ZPB5	146 aa		11.91	□□□□□ -0.5
VPS53-215	ENST00000573028	IGLV10-54	A0A075B6I4	117 aa		11.9	□□□□□ -0.5
VPS53-215	ENST00000573028	DEFB4A	O15263	64 aa		11.9	□□□□□ -0.51
VPS53-215	ENST00000573028	IMUP	Q9GZP8	106 aa		11.89	□□□□□ -0.51
VPS53-215	ENST00000573028		H0YGX0	51 aa		11.88	□□□□□ -0.51
VPS53-215	ENST00000573028	SS18	Q15532	418 aa		11.88	□□□□□ -0.51
VPS53-215	ENST00000573028	C9orf153	Q5TBE3	101 aa		11.88	□□□□□ -0.51
VPS53-215	ENST00000573028	RNASE1	P07998	156 aa	Known RBP	11.87	□□□□□ -0.51
VPS53-215	ENST00000573028		Q8N3U1	123 aa		11.86	□□□□□ -0.51
VPS53-215	ENST00000573028	LINC00269	Q8N2A0	174 aa		11.84	□□□□□ -0.51
VPS53-215	ENST00000573028	LINC00846	Q9NV44	126 aa		11.84	□□□□□ -0.51
VPS53-215	ENST00000573028	C9orf116	Q5BN46	136 aa	Predicted RBP	11.84	□□□□□ -0.51
VPS53-215	ENST00000573028	VWF	P04275	2813 aa		11.83	□□□□□ -0.52
VPS53-215	ENST00000573028	LINC00482	Q8N8I6	264 aa		11.83	□□□□□ -0.52
VPS53-215	ENST00000573028	PPDPF	Q9H3Y8	114 aa		11.83	□□□□□ -0.52
VPS53-215	ENST00000573028	TENM4	Q6N022	2769 aa		11.82	□□□□□ -0.52
VPS53-215	ENST00000573028		A0A087WVE0	104 aa		11.82	□□□□□ -0.52
VPS53-215	ENST00000573028	ORMDL1	Q9P0S3	153 aa		11.82	□□□□□ -0.52
VPS53-215	ENST00000573028	ANG	P03950	147 aa	Known RBP	11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	CFAP161	Q6P656	301 aa		11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	C3orf22	Q8N5N4	141 aa		11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	FASN	P49327	2511 aa	Known RBP	11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	FAM110A	Q9BQ89	295 aa		11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	KLK5	Q9Y337	293 aa	Predicted RBP	11.81	□□□□□ -0.52
VPS53-215	ENST00000573028	PRO0255	Q9UI72	69 aa		11.8	□□□□□ -0.52
VPS53-215	ENST00000573028	LINC00526	Q96FQ7	95 aa		11.8	□□□□□ -0.52
VPS53-215	ENST00000573028	CXCL5	P42830	114 aa		11.79	□□□□□ -0.52
VPS53-215	ENST00000573028		Q8IZM0	81 aa		11.79	□□□□□ -0.52
VPS53-215	ENST00000573028	HTN3	P15516	51 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	KRTAP1-1	Q07627	177 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	SMR3A	Q99954	134 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	DEFB135	Q30KP9	77 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	SVIP	Q8NHG7	77 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	KIR2DL5B	Q8NHK3	375 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	C16orf95	Q9H693	158 aa		11.78	□□□□□ -0.52
VPS53-215	ENST00000573028	UQCRQ	O14949	82 aa		11.77	□□□□□ -0.52
VPS53-215	ENST00000573028	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.77	□□□□□ -0.52
VPS53-215	ENST00000573028	HIST1H4A	P62805	103 aa	Known RBP	11.77	□□□□□ -0.53
VPS53-215	ENST00000573028		X6R8D5	127 aa		11.77	□□□□□ -0.53
VPS53-215	ENST00000573028		A0A1B0GUV1	79 aa		11.75	□□□□□ -0.53
VPS53-215	ENST00000573028	TMEM126A	Q9H061	195 aa		11.75	□□□□□ -0.53
VPS53-215	ENST00000573028		A0A1B0GX51	115 aa		11.75	□□□□□ -0.53
VPS53-215	ENST00000573028	SPATA3	Q8NHX4	192 aa		11.75	□□□□□ -0.53
VPS53-215	ENST00000573028	HELZ2	Q9BYK8	2649 aa	Known RBP	11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	NANOS2	P60321	138 aa	Known RBP	11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	PDZD2	O15018	2839 aa		11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	LY6G6D	O95868	133 aa		11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	REG3A	Q06141	175 aa		11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	C6orf99	Q4VX62	202 aa		11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	WFDC9	Q8NEX5	89 aa		11.74	□□□□□ -0.53
VPS53-215	ENST00000573028	KRTAP10-3	P60369	221 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	S100A7L2	Q5SY68	101 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	COX7C	P15954	63 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028		Q8N814	137 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	hADV29S1	A0JD25	119 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	CD164L2	Q6UWJ8	174 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	C6orf223	Q8N319	242 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	OBSCN-AS1	Q96MR7	158 aa		11.73	□□□□□ -0.53
VPS53-215	ENST00000573028	ATOX1	O00244	68 aa		11.72	□□□□□ -0.53
VPS53-215	ENST00000573028	KIAA0087	Q14695	138 aa		11.72	□□□□□ -0.53
VPS53-215	ENST00000573028	UNC79	Q9P2D8	2635 aa		11.71	□□□□□ -0.53
VPS53-215	ENST00000573028		Q8NDZ9	215 aa		11.71	□□□□□ -0.53
VPS53-215	ENST00000573028	HILS1	P60008	231 aa		11.71	□□□□□ -0.54
VPS53-215	ENST00000573028		Q6JHZ5	121 aa		11.71	□□□□□ -0.54
VPS53-215	ENST00000573028	RPL18A	Q02543	176 aa	Known RBP	11.7	□□□□□ -0.54
VPS53-215	ENST00000573028	LINC00612	Q8N6U2	182 aa		11.7	□□□□□ -0.54
VPS53-215	ENST00000573028	DAD1	P61803	113 aa		11.7	□□□□□ -0.54
VPS53-215	ENST00000573028	C10orf25	Q5T742	122 aa		11.69	□□□□□ -0.54
VPS53-215	ENST00000573028	UNQ6190/PRO20217	Q6UXQ8	127 aa		11.69	□□□□□ -0.54
VPS53-215	ENST00000573028	HECTD1	Q9ULT8	2610 aa		11.69	□□□□□ -0.54
VPS53-215	ENST00000573028	CCK	P06307	115 aa		11.69	□□□□□ -0.54
VPS53-215	ENST00000573028	C2orf48	Q96LS8	159 aa		11.68	□□□□□ -0.54
VPS53-215	ENST00000573028	ATR	Q13535	2644 aa		11.68	□□□□□ -0.54
VPS53-215	ENST00000573028	LINC01561	Q8N1V8	128 aa		11.68	□□□□□ -0.54
VPS53-215	ENST00000573028	ANK3	Q12955	4377 aa	Known RBP	11.67	□□□□□ -0.54
VPS53-215	ENST00000573028	IGHV4-28	A0A0C4DH34	117 aa		11.67	□□□□□ -0.54
VPS53-215	ENST00000573028	USP17L23	D6RBM5	183 aa		11.67	□□□□□ -0.54
VPS53-215	ENST00000573028	TMEM256-PLSCR3	K7ERE1	68 aa		11.67	□□□□□ -0.54
VPS53-215	ENST00000573028	CYSTM1	Q9H1C7	97 aa		11.67	□□□□□ -0.54
VPS53-215	ENST00000573028	LOC107984640	A0A0U1RRK4	108 aa		11.66	□□□□□ -0.54
VPS53-215	ENST00000573028	SPAG11B	Q08648	103 aa		11.66	□□□□□ -0.54
VPS53-215	ENST00000573028	CELA1	Q9UNI1	258 aa		11.66	□□□□□ -0.54
VPS53-215	ENST00000573028	KLK12	Q9UKR0	248 aa		11.66	□□□□□ -0.54
VPS53-215	ENST00000573028	TENM1	Q9UKZ4	2725 aa		11.66	□□□□□ -0.54
VPS53-215	ENST00000573028	JMJD7-PLA2G4B	H0Y9G9	81 aa		11.65	□□□□□ -0.54
VPS53-215	ENST00000573028	LAMTOR3	Q9UHA4	124 aa		11.65	□□□□□ -0.54
VPS53-215	ENST00000573028	SMIM9	A6NGZ8	99 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	TRAV23DV6	A0A075B6W5	121 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	LYRM9	A8MSI8	78 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms