RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 RPL28P46779 137 aaKnown RBP8.17□□□□□ -1.1
CLN3-238ENST00000569430 LINC00269Q8N2A0 174 aa8.17□□□□□ -1.1
CLN3-238ENST00000569430 F8P00451 2351 aa8.17□□□□□ -1.1
CLN3-238ENST00000569430 SMIM9A6NGZ8 99 aa8.17□□□□□ -1.1
CLN3-238ENST00000569430 FAM222AQ5U5X8 452 aa8.17□□□□□ -1.1
CLN3-238ENST00000569430 TRBV6-8A0A0A6YYG3 113 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 HRCT1Q6UXD1 115 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 IGLV4-60A0A075B6I1 120 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 SMCR5Q8TEV8 140 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 TMEM258P61165 79 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 C4orf3Q8WVX3 66 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 ZNF702PQ9H963 129 aa8.16□□□□□ -1.1
CLN3-238ENST00000569430 CHD6Q8TD26 2715 aa8.15□□□□□ -1.1
CLN3-238ENST00000569430 MRAPQ8TCY5 172 aa8.15□□□□□ -1.1
CLN3-238ENST00000569430 SNURFQ9Y675 71 aa8.15□□□□□ -1.1
CLN3-238ENST00000569430 HILS1P60008 231 aa8.15□□□□□ -1.1
CLN3-238ENST00000569430 ODF3L2Q3SX64 289 aa8.15□□□□□ -1.11
CLN3-238ENST00000569430 DEFB105AQ8NG35 78 aa8.15□□□□□ -1.11
CLN3-238ENST00000569430 CSDC2Q9Y534 153 aaKnown RBP8.15□□□□□ -1.11
CLN3-238ENST00000569430 ZNF561-AS1K7EIQ3 104 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 PLA2G2AP14555 144 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 Q6JHZ5 121 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 FAM19A1Q7Z5A9 133 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 IGLV5-39A0A0G2JS06 123 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 C1orf158Q8N1D5 194 aa8.14□□□□□ -1.11
CLN3-238ENST00000569430 Q6YL49 198 aa8.13□□□□□ -1.11
CLN3-238ENST00000569430 IGHV4-28A0A0C4DH34 117 aa8.13□□□□□ -1.11
CLN3-238ENST00000569430 FAM236DA0A1B0GTK5 79 aa8.13□□□□□ -1.11
CLN3-238ENST00000569430 FAM236CP0DP71 79 aa8.13□□□□□ -1.11
CLN3-238ENST00000569430 NTM-AS1Q6ZSK4 140 aa8.13□□□□□ -1.11
CLN3-238ENST00000569430 KIR2DL5BQ8NHK3 375 aa8.12□□□□□ -1.11
CLN3-238ENST00000569430 PRB2P02812 416 aaPredicted RBP8.12□□□□□ -1.11
CLN3-238ENST00000569430 SPAG11BQ08648 103 aa8.12□□□□□ -1.11
CLN3-238ENST00000569430 LINC00959A0A1B0GUT2 108 aa8.12□□□□□ -1.11
CLN3-238ENST00000569430 C9orf116Q5BN46 136 aaPredicted RBP8.12□□□□□ -1.11
CLN3-238ENST00000569430 XAGE1AQ9HD64 81 aa8.12□□□□□ -1.11
CLN3-238ENST00000569430 BRI3O95415 125 aa8.11□□□□□ -1.11
CLN3-238ENST00000569430 KLK12Q9UKR0 248 aa8.11□□□□□ -1.11
CLN3-238ENST00000569430 USP24Q9UPU5 2620 aa8.11□□□□□ -1.11
CLN3-238ENST00000569430 TRBV6-4A0A1B0GX49 114 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 BEAN1Q3B7T3 259 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 C11orf72Q8NBR9 251 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 KLK9Q2XQG4 91 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 Q6ZQY7 126 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 CHCHD10Q8WYQ3 142 aaPredicted RBP8.1□□□□□ -1.11
CLN3-238ENST00000569430 PRORYQ9H606 182 aa8.1□□□□□ -1.11
CLN3-238ENST00000569430 A8MTW9 85 aa8.09□□□□□ -1.11
CLN3-238ENST00000569430 CCKP06307 115 aa8.09□□□□□ -1.11
CLN3-238ENST00000569430 PRO0255Q9UI72 69 aa8.09□□□□□ -1.11
CLN3-238ENST00000569430 DEFB135Q30KP9 77 aa8.08□□□□□ -1.12
CLN3-238ENST00000569430 FLNAP21333 2647 aaKnown RBP8.08□□□□□ -1.12
CLN3-238ENST00000569430 IGLV5-45A0A087WSX0 123 aa8.08□□□□□ -1.12
CLN3-238ENST00000569430 DEFB121Q5J5C9 76 aa8.08□□□□□ -1.12
CLN3-238ENST00000569430 PKIGQ9Y2B9 76 aa8.08□□□□□ -1.12
CLN3-238ENST00000569430 REG3AQ06141 175 aa8.07□□□□□ -1.12
CLN3-238ENST00000569430 BRK1Q8WUW1 75 aa8.07□□□□□ -1.12
CLN3-238ENST00000569430 MPLKIPQ8TAP9 179 aa8.07□□□□□ -1.12
CLN3-238ENST00000569430 BBC3Q96PG8 261 aaPredicted RBP8.07□□□□□ -1.12
CLN3-238ENST00000569430 NDUFC2O95298 119 aa8.07□□□□□ -1.12
CLN3-238ENST00000569430 NREPQ16612 68 aa8.07□□□□□ -1.12
CLN3-238ENST00000569430 A0A087WZ39 114 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 IGHV4-31P0DP07 118 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 ATP5EP2Q5VTU8 51 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 Q8N814 137 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 DIRC1Q969H9 104 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 CAMK2N2Q96S95 79 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 CRYGAP11844 174 aa8.06□□□□□ -1.12
CLN3-238ENST00000569430 A0A0U1RQV1 116 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 HECTD1Q9ULT8 2610 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 IGKV2-28A0A075B6P5 120 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 DNAJC9-AS1A6NH13 148 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 IGKV2D-28P01615 120 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 DEFB113Q30KQ7 82 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 HIGD2BQ4VC39 106 aa8.05□□□□□ -1.12
CLN3-238ENST00000569430 NKAPP1Q8N9T2 125 aa8.04□□□□□ -1.12
CLN3-238ENST00000569430 NBEAL2Q6ZNJ1 2754 aa8.04□□□□□ -1.12
CLN3-238ENST00000569430 FLNBO75369 2602 aaKnown RBP8.04□□□□□ -1.12
CLN3-238ENST00000569430 C4orf26Q17RF5 130 aa8.04□□□□□ -1.12
CLN3-238ENST00000569430 IGHV3OR16-9A0A0B4J2B5 98 aa8.03□□□□□ -1.12
CLN3-238ENST00000569430 DPH3Q96FX2 82 aa8.03□□□□□ -1.12
CLN3-238ENST00000569430 ITPR3Q14573 2671 aa8.03□□□□□ -1.12
CLN3-238ENST00000569430 C9orf129Q5T035 196 aaKnown RBP8.03□□□□□ -1.12
CLN3-238ENST00000569430 F8WEM9 126 aa8.03□□□□□ -1.12
CLN3-238ENST00000569430 UNQ6190/PRO20217Q6UXQ8 127 aa8.03□□□□□ -1.12
CLN3-238ENST00000569430 COX7BP24311 80 aa8.02□□□□□ -1.13
CLN3-238ENST00000569430 LINC00482Q8N8I6 264 aa8.02□□□□□ -1.13
CLN3-238ENST00000569430 GCN1Q92616 2671 aaKnown RBP8.01□□□□□ -1.13
CLN3-238ENST00000569430 Q8IZM0 81 aa8.01□□□□□ -1.13
CLN3-238ENST00000569430 ITPR2Q14571 2701 aa8.01□□□□□ -1.13
CLN3-238ENST00000569430 CD164L2Q6UWJ8 174 aa8.01□□□□□ -1.13
CLN3-238ENST00000569430 IGKV2D-24A0A075B6R9 120 aa8□□□□□ -1.13
CLN3-238ENST00000569430 C3orf84H3BNL1 204 aa8□□□□□ -1.13
CLN3-238ENST00000569430 PDE6GP18545 87 aa8□□□□□ -1.13
CLN3-238ENST00000569430 ZNF843Q8N446 348 aa8□□□□□ -1.13
CLN3-238ENST00000569430 FHL2Q14192 279 aa8□□□□□ -1.13
CLN3-238ENST00000569430 FAM104AQ969W3 186 aa7.99□□□□□ -1.13
CLN3-238ENST00000569430 RMI2Q96E14 147 aa7.99□□□□□ -1.13
CLN3-238ENST00000569430 Q8N3U1 123 aa7.99□□□□□ -1.13
CLN3-238ENST00000569430 BPY2O14599 106 aa7.99□□□□□ -1.13
CLN3-238ENST00000569430 LINC01561Q8N1V8 128 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 157 ms