RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TEX43Q6ZNM6 134 aa9.02□□□□□ -0.97
CLN3-236ENST00000568558 CBLN2Q8IUK8 224 aa9.02□□□□□ -0.97
CLN3-236ENST00000568558 TOMM6Q96B49 74 aa9.02□□□□□ -0.97
CLN3-236ENST00000568558 AMELXQ99217 191 aa9.02□□□□□ -0.97
CLN3-236ENST00000568558 URB1-AS1Q96HZ7 61 aa9.01□□□□□ -0.97
CLN3-236ENST00000568558 TRBV30A0A0K0K1B3 111 aa9□□□□□ -0.97
CLN3-236ENST00000568558 M0QXV9 152 aa9□□□□□ -0.97
CLN3-236ENST00000568558 KRTAP1-4P0C5Y4 121 aa9□□□□□ -0.97
CLN3-236ENST00000568558 C18orf32Q8TCD1 76 aa9□□□□□ -0.97
CLN3-236ENST00000568558 VCX2Q9H322 139 aa9□□□□□ -0.97
CLN3-236ENST00000568558 IGLV1-50A0A075B6I6 118 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 NDUFC2-KCTD14E9PQ53 114 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 UBE2BP63146 152 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 C2orf82Q6UX34 121 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 Q6ZN92 141 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 FA2HQ7L5A8 372 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 SCGB3A1Q96QR1 104 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 TIMM17AQ99595 171 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 C2orf88Q9BSF0 95 aa8.99□□□□□ -0.97
CLN3-236ENST00000568558 NPSP0C0P6 89 aa8.98□□□□□ -0.97
CLN3-236ENST00000568558 C9orf129Q5T035 196 aaKnown RBP8.98□□□□□ -0.97
CLN3-236ENST00000568558 A0A096LNJ9 63 aa8.97□□□□□ -0.97
CLN3-236ENST00000568558 G0S2P27469 103 aa8.97□□□□□ -0.97
CLN3-236ENST00000568558 ERASQ7Z444 233 aa8.97□□□□□ -0.97
CLN3-236ENST00000568558 LINC01561Q8N1V8 128 aa8.97□□□□□ -0.97
CLN3-236ENST00000568558 PACRGQ96M98 296 aaPredicted RBP8.97□□□□□ -0.97
CLN3-236ENST00000568558 SMCO4Q9NRQ5 59 aa8.97□□□□□ -0.97
CLN3-236ENST00000568558 PMCHL1Q16048 86 aa8.96□□□□□ -0.98
CLN3-236ENST00000568558 FAM19A3Q7Z5A8 133 aa8.95□□□□□ -0.98
CLN3-236ENST00000568558 LINC00614P0C842 121 aa8.94□□□□□ -0.98
CLN3-236ENST00000568558 PAPPA-AS1Q5QFB9 102 aa8.94□□□□□ -0.98
CLN3-236ENST00000568558 RPL13AP40429 203 aaKnown RBP8.93□□□□□ -0.98
CLN3-236ENST00000568558 CDKN2A-AS1Q9UH64 79 aa8.93□□□□□ -0.98
CLN3-236ENST00000568558 CST9LQ9H4G1 147 aa8.92□□□□□ -0.98
CLN3-236ENST00000568558 PRSS2P07478 247 aa8.91□□□□□ -0.98
CLN3-236ENST00000568558 Q8IZM0 81 aa8.91□□□□□ -0.98
CLN3-236ENST00000568558 TOMM7Q9P0U1 55 aa8.91□□□□□ -0.98
CLN3-236ENST00000568558 LINC01549A6NIU2 74 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 ZNF861PO60384 105 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 HBDP02042 147 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 TRGC2P03986 189 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 CKS1BP61024 79 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 HERVK_113P63121 156 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 PMVKQ15126 192 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 PDZD11Q5EBL8 140 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 LINC00469Q8N7U9 141 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 GEMIN7Q9H840 131 aaKnown RBP8.9□□□□□ -0.98
CLN3-236ENST00000568558 C22orf24Q9Y442 160 aa8.9□□□□□ -0.98
CLN3-236ENST00000568558 MUC2Q02817 5179 aa8.9□□□□□ -0.99
CLN3-236ENST00000568558 COLCA2A8K830 154 aa8.89□□□□□ -0.99
CLN3-236ENST00000568558 NUPR1O60356 82 aa8.89□□□□□ -0.99
CLN3-236ENST00000568558 SEC11AP67812 179 aa8.89□□□□□ -0.99
CLN3-236ENST00000568558 PRR4Q16378 134 aa8.89□□□□□ -0.99
CLN3-236ENST00000568558 C6orf226Q5I0X4 101 aa8.89□□□□□ -0.99
CLN3-236ENST00000568558 IGLV5-45A0A087WSX0 123 aa8.88□□□□□ -0.99
CLN3-236ENST00000568558 TINCRA0A1B0GVN0 87 aa8.88□□□□□ -0.99
CLN3-236ENST00000568558 SCO1O75880 301 aa8.88□□□□□ -0.99
CLN3-236ENST00000568558 RAB5BP61020 215 aa8.88□□□□□ -0.99
CLN3-236ENST00000568558 XAGE1AQ9HD64 81 aa8.88□□□□□ -0.99
CLN3-236ENST00000568558 SMIM1B2RUZ4 78 aa8.87□□□□□ -0.99
CLN3-236ENST00000568558 NDUFA6P56556 154 aa8.87□□□□□ -0.99
CLN3-236ENST00000568558 LBHQ53QV2 105 aaPredicted RBP8.86□□□□□ -0.99
CLN3-236ENST00000568558 F8VRH5 84 aa8.85□□□□□ -0.99
CLN3-236ENST00000568558 SPINK8P0C7L1 97 aa8.85□□□□□ -0.99
CLN3-236ENST00000568558 LINC00310P59036 64 aa8.85□□□□□ -0.99
CLN3-236ENST00000568558 CHCHD1Q96BP2 118 aaKnown RBP8.85□□□□□ -0.99
CLN3-236ENST00000568558 TP73-AS1Q9UF72 201 aa8.85□□□□□ -0.99
CLN3-236ENST00000568558 ATP5LO75964 103 aa8.84□□□□□ -0.99
CLN3-236ENST00000568558 IGLC3P0DOY3 106 aa8.84□□□□□ -0.99
CLN3-236ENST00000568558 FAM19A2Q8N3H0 131 aa8.84□□□□□ -0.99
CLN3-236ENST00000568558 CXCL5P42830 114 aa8.83□□□□□ -1
CLN3-236ENST00000568558 MRPL55Q7Z7F7 128 aaKnown RBP8.83□□□□□ -1
CLN3-236ENST00000568558 BAGE3Q86Y29 109 aa8.83□□□□□ -1
CLN3-236ENST00000568558 A0A087X002 238 aa8.82□□□□□ -1
CLN3-236ENST00000568558 BCE1O60756 84 aa8.82□□□□□ -1
CLN3-236ENST00000568558 ZNF22P17026 224 aaPredicted RBP8.82□□□□□ -1
CLN3-236ENST00000568558 RPL28P46779 137 aaKnown RBP8.82□□□□□ -1
CLN3-236ENST00000568558 C11orf86A6NJI1 115 aa8.81□□□□□ -1
CLN3-236ENST00000568558 SERF1AO75920 110 aa8.81□□□□□ -1
CLN3-236ENST00000568558 TSPAN13O95857 204 aa8.81□□□□□ -1
CLN3-236ENST00000568558 COX7B2Q8TF08 81 aa8.81□□□□□ -1
CLN3-236ENST00000568558 HSBP1O75506 76 aa8.8□□□□□ -1
CLN3-236ENST00000568558 IFI27L1Q96BM0 104 aa8.8□□□□□ -1
CLN3-236ENST00000568558 LINC00167Q96N53 147 aa8.79□□□□□ -1
CLN3-236ENST00000568558 MUC17Q685J3 4493 aa8.78□□□□□ -1
CLN3-236ENST00000568558 IGLV5-39A0A0G2JS06 123 aa8.78□□□□□ -1
CLN3-236ENST00000568558 RPL37AP8A6NKH3 93 aa8.78□□□□□ -1
CLN3-236ENST00000568558 H3BRM9 83 aa8.78□□□□□ -1
CLN3-236ENST00000568558 CRYGAP11844 174 aa8.78□□□□□ -1
CLN3-236ENST00000568558 TYMSOSQ8TAI1 123 aa8.78□□□□□ -1
CLN3-236ENST00000568558 CHTOPQ9Y3Y2 248 aaKnown RBP8.78□□□□□ -1
CLN3-236ENST00000568558 IGLV5-37A0A075B6J1 123 aa8.76□□□□□ -1.01
CLN3-236ENST00000568558 TRAV12-1A0A0B4J245 112 aa8.76□□□□□ -1.01
CLN3-236ENST00000568558 TMEM170BQ5T4T1 132 aa8.76□□□□□ -1.01
CLN3-236ENST00000568558 GAGE10A6NGK3 116 aa8.75□□□□□ -1.01
CLN3-236ENST00000568558 KRTAP13-1Q8IUC0 172 aa8.75□□□□□ -1.01
CLN3-236ENST00000568558 A0A0U1RQV1 116 aa8.74□□□□□ -1.01
CLN3-236ENST00000568558 H0Y8G0 127 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BKO60814 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 LEPROTL1O95214 131 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms