RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TEX43Q6ZNM6 134 aa9.08□□□□□ -0.96
CLK3-223ENST00000568488 NKAPP1Q8N9T2 125 aa9.08□□□□□ -0.96
CLK3-223ENST00000568488 F8VRH5 84 aa9.07□□□□□ -0.96
CLK3-223ENST00000568488 ZC2HC1BQ5TFG8 222 aa9.07□□□□□ -0.96
CLK3-223ENST00000568488 FAM19A1Q7Z5A9 133 aa9.07□□□□□ -0.96
CLK3-223ENST00000568488 TMEM141Q96I45 108 aa9.07□□□□□ -0.96
CLK3-223ENST00000568488 C2orf88Q9BSF0 95 aa9.06□□□□□ -0.96
CLK3-223ENST00000568488 EIF5A2Q9GZV4 153 aaKnown RBP9.06□□□□□ -0.96
CLK3-223ENST00000568488 PYGO1Q9Y3Y4 419 aa9.06□□□□□ -0.96
CLK3-223ENST00000568488 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.05□□□□□ -0.96
CLK3-223ENST00000568488 TMEM250H0YL14 139 aa9.05□□□□□ -0.96
CLK3-223ENST00000568488 SCO1O75880 301 aa9.05□□□□□ -0.96
CLK3-223ENST00000568488 RAB5AP20339 215 aa9.05□□□□□ -0.96
CLK3-223ENST00000568488 PLEKHB2Q96CS7 222 aa9.05□□□□□ -0.96
CLK3-223ENST00000568488 OSTCQ9NRP0 149 aa9.05□□□□□ -0.96
CLK3-223ENST00000568488 LORP23490 312 aaPredicted RBP9.04□□□□□ -0.96
CLK3-223ENST00000568488 DAND5Q8N907 189 aa9.04□□□□□ -0.96
CLK3-223ENST00000568488 D6R8Y8 96 aa9.03□□□□□ -0.96
CLK3-223ENST00000568488 NPYP01303 97 aa9.03□□□□□ -0.96
CLK3-223ENST00000568488 KRTAP10-6P60371 365 aaPredicted RBP9.03□□□□□ -0.96
CLK3-223ENST00000568488 KRTAP19-2Q3LHN2 52 aa9.03□□□□□ -0.96
CLK3-223ENST00000568488 LINC01551Q86U37 167 aa9.03□□□□□ -0.96
CLK3-223ENST00000568488 IGLV5-37A0A075B6J1 123 aa9.02□□□□□ -0.97
CLK3-223ENST00000568488 RAB5BP61020 215 aa9.02□□□□□ -0.97
CLK3-223ENST00000568488 CBLN2Q8IUK8 224 aa9.02□□□□□ -0.97
CLK3-223ENST00000568488 NAT8BQ9UHF3 227 aa9.02□□□□□ -0.97
CLK3-223ENST00000568488 V9GYV3 84 aa9.02□□□□□ -0.97
CLK3-223ENST00000568488 TMEM238C9JI98 176 aa9.01□□□□□ -0.97
CLK3-223ENST00000568488 Q8NBF4 154 aa9.01□□□□□ -0.97
CLK3-223ENST00000568488 SMIM7Q9BQ49 75 aa9.01□□□□□ -0.97
CLK3-223ENST00000568488 VCX2Q9H322 139 aa9.01□□□□□ -0.97
CLK3-223ENST00000568488 AKAP14Q86UN6 197 aa9□□□□□ -0.97
CLK3-223ENST00000568488 TCTE3Q8IZS6 198 aa9□□□□□ -0.97
CLK3-223ENST00000568488 HIGD2AQ9BW72 106 aa9□□□□□ -0.97
CLK3-223ENST00000568488 TMEM126AQ9H061 195 aa9□□□□□ -0.97
CLK3-223ENST00000568488 NDUFA12Q9UI09 145 aa9□□□□□ -0.97
CLK3-223ENST00000568488 CDKN2A-AS1Q9UH64 79 aa8.99□□□□□ -0.97
CLK3-223ENST00000568488 M0R2T5 61 aa8.98□□□□□ -0.97
CLK3-223ENST00000568488 CXCL5P42830 114 aa8.98□□□□□ -0.97
CLK3-223ENST00000568488 XP32Q5T750 250 aa8.98□□□□□ -0.97
CLK3-223ENST00000568488 SPINK1P00995 79 aa8.97□□□□□ -0.97
CLK3-223ENST00000568488 FAM74A3Q4VXF1 159 aa8.97□□□□□ -0.97
CLK3-223ENST00000568488 C2orf66Q6UXQ4 117 aa8.97□□□□□ -0.97
CLK3-223ENST00000568488 AMELXQ99217 191 aa8.97□□□□□ -0.97
CLK3-223ENST00000568488 GNB1LQ9BYB4 327 aa8.97□□□□□ -0.97
CLK3-223ENST00000568488 HERVK_113P63121 156 aa8.96□□□□□ -0.98
CLK3-223ENST00000568488 SPRR4Q96PI1 79 aa8.96□□□□□ -0.98
CLK3-223ENST00000568488 GEMIN7Q9H840 131 aaKnown RBP8.96□□□□□ -0.98
CLK3-223ENST00000568488 LOC389332A0A1B0GUA5 103 aa8.95□□□□□ -0.98
CLK3-223ENST00000568488 A0A1B0GW15 77 aa8.95□□□□□ -0.98
CLK3-223ENST00000568488 F8W036 122 aa8.95□□□□□ -0.98
CLK3-223ENST00000568488 CYSLTR1Q9Y271 337 aa8.95□□□□□ -0.98
CLK3-223ENST00000568488 M0R378 163 aa8.94□□□□□ -0.98
CLK3-223ENST00000568488 PPBPP02775 128 aa8.94□□□□□ -0.98
CLK3-223ENST00000568488 MRPL54Q6P161 138 aaKnown RBP8.94□□□□□ -0.98
CLK3-223ENST00000568488 FAM19A3Q7Z5A8 133 aa8.94□□□□□ -0.98
CLK3-223ENST00000568488 IGLV8-61A0A075B6I0 122 aa8.93□□□□□ -0.98
CLK3-223ENST00000568488 SEC11AP67812 179 aa8.93□□□□□ -0.98
CLK3-223ENST00000568488 COX7B2Q8TF08 81 aa8.93□□□□□ -0.98
CLK3-223ENST00000568488 SMIM27A0A1W2PRY6 76 aa8.92□□□□□ -0.98
CLK3-223ENST00000568488 TMEM136Q6ZRR5 245 aa8.92□□□□□ -0.98
CLK3-223ENST00000568488 ORMDL3Q8N138 153 aa8.92□□□□□ -0.98
CLK3-223ENST00000568488 PRELID3AQ96N28 172 aa8.92□□□□□ -0.98
CLK3-223ENST00000568488 SLC51BQ86UW2 128 aa8.91□□□□□ -0.98
CLK3-223ENST00000568488 S100A8P05109 93 aa8.9□□□□□ -0.98
CLK3-223ENST00000568488 PCOTHQ58A44 107 aa8.9□□□□□ -0.98
CLK3-223ENST00000568488 FAM19A2Q8N3H0 131 aa8.9□□□□□ -0.98
CLK3-223ENST00000568488 ZNF706Q9Y5V0 76 aaPredicted RBP8.9□□□□□ -0.98
CLK3-223ENST00000568488 SMIM1B2RUZ4 78 aa8.89□□□□□ -0.99
CLK3-223ENST00000568488 PFN2P35080 140 aa8.89□□□□□ -0.99
CLK3-223ENST00000568488 Q8N377 158 aa8.89□□□□□ -0.99
CLK3-223ENST00000568488 IGIPA6NJ69 53 aa8.88□□□□□ -0.99
CLK3-223ENST00000568488 VPREB1P12018 145 aa8.88□□□□□ -0.99
CLK3-223ENST00000568488 BLOC1S1P78537 153 aa8.88□□□□□ -0.99
CLK3-223ENST00000568488 PDZD11Q5EBL8 140 aa8.88□□□□□ -0.99
CLK3-223ENST00000568488 RPL23P62829 140 aaKnown RBP8.87□□□□□ -0.99
CLK3-223ENST00000568488 RPL24P83731 157 aaKnown RBP8.87□□□□□ -0.99
CLK3-223ENST00000568488 ADIRFQ15847 76 aa8.87□□□□□ -0.99
CLK3-223ENST00000568488 MAP1LC3AQ9H492 121 aa8.87□□□□□ -0.99
CLK3-223ENST00000568488 SLC25A20O43772 301 aa8.86□□□□□ -0.99
CLK3-223ENST00000568488 SRP19P09132 144 aaKnown RBP8.86□□□□□ -0.99
CLK3-223ENST00000568488 NPSP0C0P6 89 aa8.86□□□□□ -0.99
CLK3-223ENST00000568488 RAB14P61106 215 aa8.86□□□□□ -0.99
CLK3-223ENST00000568488 PAPPA-AS1Q5QFB9 102 aa8.86□□□□□ -0.99
CLK3-223ENST00000568488 USH2AO75445 5202 aa8.86□□□□□ -0.99
CLK3-223ENST00000568488 A0A1B0GXF2 115 aa8.85□□□□□ -0.99
CLK3-223ENST00000568488 Q8N8P6 123 aa8.85□□□□□ -0.99
CLK3-223ENST00000568488 SSPOA2VEC9 5147 aa8.85□□□□□ -0.99
CLK3-223ENST00000568488 PRSS47A8MTI9 375 aa8.84□□□□□ -0.99
CLK3-223ENST00000568488 ATP5LO75964 103 aa8.84□□□□□ -0.99
CLK3-223ENST00000568488 SPINK8P0C7L1 97 aa8.84□□□□□ -0.99
CLK3-223ENST00000568488 ORMDL2Q53FV1 153 aa8.84□□□□□ -0.99
CLK3-223ENST00000568488 SND1-IT1Q9HBX3 110 aa8.84□□□□□ -0.99
CLK3-223ENST00000568488 ALKAL2Q6UX46 152 aa8.83□□□□□ -1
CLK3-223ENST00000568488 FLGP20930 4061 aaPredicted RBP8.82□□□□□ -1
CLK3-223ENST00000568488 IGLV9-49A0A0B4J1Y8 123 aa8.82□□□□□ -1
CLK3-223ENST00000568488 MOBPQ13875 183 aa8.82□□□□□ -1
CLK3-223ENST00000568488 SMCR5Q8TEV8 140 aa8.82□□□□□ -1
CLK3-223ENST00000568488 RPS29P62273 56 aaKnown RBP8.81□□□□□ -1
CLK3-223ENST00000568488 COX6B2Q6YFQ2 88 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms