RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 NPSP0C0P6 89 aa10.27□□□□□ -0.77
CLK3-221ENST00000568139 ATP5L2Q7Z4Y8 100 aa10.27□□□□□ -0.77
CLK3-221ENST00000568139 CYSLTR1Q9Y271 337 aa10.27□□□□□ -0.77
CLK3-221ENST00000568139 LOC389332A0A1B0GUA5 103 aa10.26□□□□□ -0.77
CLK3-221ENST00000568139 F8VRH5 84 aa10.26□□□□□ -0.77
CLK3-221ENST00000568139 SRSF3P84103 164 aaKnown RBP10.26□□□□□ -0.77
CLK3-221ENST00000568139 KRTAP13-2Q52LG2 175 aa10.26□□□□□ -0.77
CLK3-221ENST00000568139 ANAPC11Q9NYG5 84 aa10.26□□□□□ -0.77
CLK3-221ENST00000568139 LAMTOR2Q9Y2Q5 125 aa10.26□□□□□ -0.77
CLK3-221ENST00000568139 IGIPA6NJ69 53 aa10.25□□□□□ -0.77
CLK3-221ENST00000568139 Q8N8P6 123 aa10.25□□□□□ -0.77
CLK3-221ENST00000568139 LINC00167Q96N53 147 aa10.25□□□□□ -0.77
CLK3-221ENST00000568139 MAP1LC3AQ9H492 121 aa10.25□□□□□ -0.77
CLK3-221ENST00000568139 PEA15Q15121 130 aa10.24□□□□□ -0.77
CLK3-221ENST00000568139 CDKN2A-AS1Q9UH64 79 aa10.24□□□□□ -0.77
CLK3-221ENST00000568139 RPL37AP8A6NKH3 93 aa10.23□□□□□ -0.77
CLK3-221ENST00000568139 HERVK_113P63121 156 aa10.23□□□□□ -0.77
CLK3-221ENST00000568139 SEC11AP67812 179 aa10.23□□□□□ -0.77
CLK3-221ENST00000568139 KRTAP13-1Q8IUC0 172 aa10.23□□□□□ -0.77
CLK3-221ENST00000568139 RETNLBQ9BQ08 111 aa10.23□□□□□ -0.77
CLK3-221ENST00000568139 CXCL5P42830 114 aa10.22□□□□□ -0.77
CLK3-221ENST00000568139 TPRXLQ17RH7 258 aa10.22□□□□□ -0.77
CLK3-221ENST00000568139 ORMDL2Q53FV1 153 aa10.22□□□□□ -0.77
CLK3-221ENST00000568139 FAM229BQ4G0N7 80 aa10.21□□□□□ -0.77
CLK3-221ENST00000568139 K7EMI3 77 aa10.2□□□□□ -0.78
CLK3-221ENST00000568139 LINC00304Q8N9R0 145 aa10.2□□□□□ -0.78
CLK3-221ENST00000568139 CDIP1Q9H305 208 aa10.2□□□□□ -0.78
CLK3-221ENST00000568139 IGLV5-37A0A075B6J1 123 aa10.19□□□□□ -0.78
CLK3-221ENST00000568139 GEMIN7Q9H840 131 aaKnown RBP10.19□□□□□ -0.78
CLK3-221ENST00000568139 hCG_2014768A0A024R1R8 64 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 GAGE10A6NGK3 116 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 UBE2AP49459 152 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 CTAG1AP78358 180 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 PAPPA-AS1Q5QFB9 102 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 MUC17Q685J3 4493 aa10.18□□□□□ -0.78
CLK3-221ENST00000568139 IGLV7-46A0A075B6I9 117 aa10.17□□□□□ -0.78
CLK3-221ENST00000568139 SMIM1B2RUZ4 78 aa10.16□□□□□ -0.78
CLK3-221ENST00000568139 PNRC1Q12796 327 aaPredicted RBP10.16□□□□□ -0.78
CLK3-221ENST00000568139 TIMM17AQ99595 171 aa10.16□□□□□ -0.78
CLK3-221ENST00000568139 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
CLK3-221ENST00000568139 NXT2Q9NPJ8 142 aaKnown RBP10.15□□□□□ -0.78
CLK3-221ENST00000568139 G0S2P27469 103 aa10.14□□□□□ -0.79
CLK3-221ENST00000568139 COX7B2Q8TF08 81 aa10.14□□□□□ -0.79
CLK3-221ENST00000568139 TOMM6Q96B49 74 aa10.14□□□□□ -0.79
CLK3-221ENST00000568139 IGKV2D-26A0A0A0MRZ7 120 aa10.13□□□□□ -0.79
CLK3-221ENST00000568139 NKAPP1Q8N9T2 125 aa10.13□□□□□ -0.79
CLK3-221ENST00000568139 IGLV5-45A0A087WSX0 123 aa10.12□□□□□ -0.79
CLK3-221ENST00000568139 TINCRA0A1B0GVN0 87 aa10.11□□□□□ -0.79
CLK3-221ENST00000568139 RAB5BP61020 215 aa10.11□□□□□ -0.79
CLK3-221ENST00000568139 ERASQ7Z444 233 aa10.11□□□□□ -0.79
CLK3-221ENST00000568139 IGKV2-28A0A075B6P5 120 aa10.1□□□□□ -0.79
CLK3-221ENST00000568139 SCO1O75880 301 aa10.1□□□□□ -0.79
CLK3-221ENST00000568139 IGKV2D-28P01615 120 aa10.1□□□□□ -0.79
CLK3-221ENST00000568139 PPDPFQ9H3Y8 114 aa10.1□□□□□ -0.79
CLK3-221ENST00000568139 ANAPC16Q96DE5 110 aa10.09□□□□□ -0.79
CLK3-221ENST00000568139 PRLHP81277 87 aa10.08□□□□□ -0.8
CLK3-221ENST00000568139 SCGB3A1Q96QR1 104 aa10.08□□□□□ -0.8
CLK3-221ENST00000568139 MT-ND4LP03901 98 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 SPINK8P0C7L1 97 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 ADCYAP1P18509 176 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 FAM19A1Q7Z5A9 133 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 PLEKHB2Q96CS7 222 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 TMEM126AQ9H061 195 aa10.06□□□□□ -0.8
CLK3-221ENST00000568139 VPREB1P12018 145 aa10.05□□□□□ -0.8
CLK3-221ENST00000568139 C3orf22Q8N5N4 141 aa10.05□□□□□ -0.8
CLK3-221ENST00000568139 CST9LQ9H4G1 147 aa10.05□□□□□ -0.8
CLK3-221ENST00000568139 TMEM238C9JI98 176 aa10.04□□□□□ -0.8
CLK3-221ENST00000568139 ATP5LO75964 103 aa10.04□□□□□ -0.8
CLK3-221ENST00000568139 M0R378 163 aa10.03□□□□□ -0.8
CLK3-221ENST00000568139 SPAG11AQ6PDA7 123 aa10.03□□□□□ -0.8
CLK3-221ENST00000568139 MRPL18Q9H0U6 180 aaKnown RBP10.03□□□□□ -0.8
CLK3-221ENST00000568139 LINC01549A6NIU2 74 aa10.02□□□□□ -0.81
CLK3-221ENST00000568139 KIAA1644Q3SXP7 199 aa10.02□□□□□ -0.81
CLK3-221ENST00000568139 FP248Q71RG6 208 aaPredicted RBP10.02□□□□□ -0.81
CLK3-221ENST00000568139 LINC01546A6NGU7 62 aa10.01□□□□□ -0.81
CLK3-221ENST00000568139 PFN2P35080 140 aa10.01□□□□□ -0.81
CLK3-221ENST00000568139 GNB1LQ9BYB4 327 aa10.01□□□□□ -0.81
CLK3-221ENST00000568139 SND1-IT1Q9HBX3 110 aa10.01□□□□□ -0.81
CLK3-221ENST00000568139 PMVKQ15126 192 aa10□□□□□ -0.81
CLK3-221ENST00000568139 CBLN2Q8IUK8 224 aa10□□□□□ -0.81
CLK3-221ENST00000568139 H3BRM9 83 aa9.99□□□□□ -0.81
CLK3-221ENST00000568139 RPL24P83731 157 aaKnown RBP9.99□□□□□ -0.81
CLK3-221ENST00000568139 ASB16-AS1Q495Z4 193 aa9.99□□□□□ -0.81
CLK3-221ENST00000568139 IGLV5-39A0A0G2JS06 123 aa9.98□□□□□ -0.81
CLK3-221ENST00000568139 KRTAP13-3Q3SY46 172 aa9.98□□□□□ -0.81
CLK3-221ENST00000568139 LCE2DQ5TA82 110 aaPredicted RBP9.98□□□□□ -0.81
CLK3-221ENST00000568139 COX17Q14061 63 aa9.97□□□□□ -0.81
CLK3-221ENST00000568139 LINC00337Q8N6G1 96 aa9.97□□□□□ -0.81
CLK3-221ENST00000568139 Q8NDZ9 215 aa9.97□□□□□ -0.81
CLK3-221ENST00000568139 ERG28Q9UKR5 140 aa9.97□□□□□ -0.81
CLK3-221ENST00000568139 SPRR4Q96PI1 79 aa9.96□□□□□ -0.82
CLK3-221ENST00000568139 HIGD2AQ9BW72 106 aa9.96□□□□□ -0.82
CLK3-221ENST00000568139 A0A1B0GVG6 124 aa9.95□□□□□ -0.82
CLK3-221ENST00000568139 IGLC3P0DOY3 106 aa9.95□□□□□ -0.82
CLK3-221ENST00000568139 LINC01547P58512 204 aaPredicted RBP9.95□□□□□ -0.82
CLK3-221ENST00000568139 RAB14P61106 215 aa9.95□□□□□ -0.82
CLK3-221ENST00000568139 C4orf48Q5BLP8 95 aa9.95□□□□□ -0.82
CLK3-221ENST00000568139 KRTAP4-1Q9BYQ7 146 aa9.94□□□□□ -0.82
CLK3-221ENST00000568139 ZNF22P17026 224 aaPredicted RBP9.92□□□□□ -0.82
CLK3-221ENST00000568139 TRAV9-1A0A075B6T8 112 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms