RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C11orf68Q9H3H3 251 aaKnown RBP13.89□□□□□ -0.19
CLN3-230ENST00000568076 CMYA5Q8N3K9 4069 aa13.88□□□□□ -0.19
CLN3-230ENST00000568076 REG3AQ06141 175 aa13.88□□□□□ -0.19
CLN3-230ENST00000568076 C6orf226Q5I0X4 101 aa13.88□□□□□ -0.19
CLN3-230ENST00000568076 PKD1L1Q8TDX9 2849 aa13.88□□□□□ -0.19
CLN3-230ENST00000568076 LELP1Q5T871 98 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 CD164L2Q6UWJ8 174 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 LINC01561Q8N1V8 128 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 PPDPFLQ8WWR9 84 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 IGLV10-54A0A075B6I4 117 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 Q8IZM0 81 aa13.87□□□□□ -0.19
CLN3-230ENST00000568076 CHCHD10Q8WYQ3 142 aaPredicted RBP13.87□□□□□ -0.19
CLN3-230ENST00000568076 STAB1Q9NY15 2570 aa13.86□□□□□ -0.19
CLN3-230ENST00000568076 LST1O00453 97 aa13.86□□□□□ -0.19
CLN3-230ENST00000568076 PFN2P35080 140 aa13.86□□□□□ -0.19
CLN3-230ENST00000568076 TRBV10-2A0A0K0K1G8 114 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 LINC01600Q96MT4 127 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 IGKV2-28A0A075B6P5 120 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 IGKV2D-28P01615 120 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 CCL18P55774 89 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 C2orf82Q6UX34 121 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 SND1-IT1Q9HBX3 110 aa13.85□□□□□ -0.19
CLN3-230ENST00000568076 ANK2Q01484 3957 aa13.84□□□□□ -0.19
CLN3-230ENST00000568076 GAGE12HA6NDE8 117 aa13.83□□□□□ -0.19
CLN3-230ENST00000568076 COX7A2LO14548 114 aa13.83□□□□□ -0.2
CLN3-230ENST00000568076 KIAA0087Q14695 138 aa13.83□□□□□ -0.2
CLN3-230ENST00000568076 LINC00337Q8N6G1 96 aa13.83□□□□□ -0.2
CLN3-230ENST00000568076 SPATA25Q9BR10 227 aa13.83□□□□□ -0.2
CLN3-230ENST00000568076 C21orf62-AS1Q17RA5 79 aa13.82□□□□□ -0.2
CLN3-230ENST00000568076 LYPD5Q6UWN5 251 aa13.81□□□□□ -0.2
CLN3-230ENST00000568076 TRAV13-2A0A0B4J235 113 aa13.8□□□□□ -0.2
CLN3-230ENST00000568076 NTN5Q8WTR8 489 aaPredicted RBP13.8□□□□□ -0.2
CLN3-230ENST00000568076 Q6ZTC4 211 aa13.79□□□□□ -0.2
CLN3-230ENST00000568076 CYSRT1A8MQ03 144 aa13.78□□□□□ -0.2
CLN3-230ENST00000568076 CRPP02741 224 aa13.78□□□□□ -0.2
CLN3-230ENST00000568076 PRR34Q9NV39 138 aa13.78□□□□□ -0.2
CLN3-230ENST00000568076 CKS1BP61024 79 aa13.78□□□□□ -0.2
CLN3-230ENST00000568076 KLK12Q9UKR0 248 aa13.78□□□□□ -0.2
CLN3-230ENST00000568076 DNAH3Q8TD57 4116 aa13.77□□□□□ -0.2
CLN3-230ENST00000568076 MALP21145 153 aa13.77□□□□□ -0.21
CLN3-230ENST00000568076 H3BT86 120 aa13.76□□□□□ -0.21
CLN3-230ENST00000568076 KPRPQ5T749 579 aaPredicted RBP13.76□□□□□ -0.21
CLN3-230ENST00000568076 CDIP1Q9H305 208 aa13.76□□□□□ -0.21
CLN3-230ENST00000568076 ENHOQ6UWT2 76 aa13.76□□□□□ -0.21
CLN3-230ENST00000568076 TEX49A0A1B0GTD5 131 aa13.75□□□□□ -0.21
CLN3-230ENST00000568076 RPL28P46779 137 aaKnown RBP13.75□□□□□ -0.21
CLN3-230ENST00000568076 H3BNG1 76 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 CFAP161Q6P656 301 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 MAST4O15021 2626 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 TENM3Q9P273 2699 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 FAM218AQ96MZ4 157 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 SIGMAR1Q99720 223 aa13.74□□□□□ -0.21
CLN3-230ENST00000568076 A0A0J9YWU9 116 aa13.73□□□□□ -0.21
CLN3-230ENST00000568076 CXCL5P42830 114 aa13.73□□□□□ -0.21
CLN3-230ENST00000568076 SMIM11BQ8TCY0 68 aa13.72□□□□□ -0.21
CLN3-230ENST00000568076 C9orf116Q5BN46 136 aaPredicted RBP13.71□□□□□ -0.21
CLN3-230ENST00000568076 WFDC10BQ8IUB3 73 aa13.71□□□□□ -0.21
CLN3-230ENST00000568076 KLK5Q9Y337 293 aaPredicted RBP13.71□□□□□ -0.21
CLN3-230ENST00000568076 UBE2WQ96B02 151 aa13.71□□□□□ -0.22
CLN3-230ENST00000568076 C6orf223Q8N319 242 aa13.7□□□□□ -0.22
CLN3-230ENST00000568076 NANOS2P60321 138 aaKnown RBP13.69□□□□□ -0.22
CLN3-230ENST00000568076 COX17Q14061 63 aa13.69□□□□□ -0.22
CLN3-230ENST00000568076 TRAV8-4A0A0B4J246 113 aa13.68□□□□□ -0.22
CLN3-230ENST00000568076 TRACP01848 142 aa13.68□□□□□ -0.22
CLN3-230ENST00000568076 SPAG11BQ08648 103 aa13.68□□□□□ -0.22
CLN3-230ENST00000568076 C10orf25Q5T742 122 aa13.68□□□□□ -0.22
CLN3-230ENST00000568076 LINC00526Q96FQ7 95 aa13.68□□□□□ -0.22
CLN3-230ENST00000568076 BAHCC1Q9P281 2608 aa13.67□□□□□ -0.22
CLN3-230ENST00000568076 UNQ6190/PRO20217Q6UXQ8 127 aa13.66□□□□□ -0.22
CLN3-230ENST00000568076 PRR3P79522 188 aaKnown RBP13.65□□□□□ -0.22
CLN3-230ENST00000568076 ESRGQ1W209 222 aa13.65□□□□□ -0.22
CLN3-230ENST00000568076 OR13C6PQ8NH95 151 aa13.65□□□□□ -0.22
CLN3-230ENST00000568076 C11orf45Q8TAV5 145 aa13.65□□□□□ -0.22
CLN3-230ENST00000568076 PRB2P02812 416 aaPredicted RBP13.64□□□□□ -0.23
CLN3-230ENST00000568076 COL6A5A8TX70 2615 aa13.64□□□□□ -0.23
CLN3-230ENST00000568076 DEFB131BA0A096LNP1 70 aa13.63□□□□□ -0.23
CLN3-230ENST00000568076 XGP55808 180 aa13.63□□□□□ -0.23
CLN3-230ENST00000568076 NOTCH1P46531 2555 aa13.63□□□□□ -0.23
CLN3-230ENST00000568076 A0A087WYN8 130 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 Q8NDZ9 215 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 NDUFC2O95298 119 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 DEFB121Q5J5C9 76 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 Q9HAA7 133 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 C22orf24Q9Y442 160 aa13.62□□□□□ -0.23
CLN3-230ENST00000568076 MT-ATP8P03928 68 aa13.61□□□□□ -0.23
CLN3-230ENST00000568076 KRTAP26-1Q6PEX3 210 aa13.61□□□□□ -0.23
CLN3-230ENST00000568076 BAALC-AS2P0C853 105 aa13.6□□□□□ -0.23
CLN3-230ENST00000568076 H0YGX0 51 aa13.59□□□□□ -0.23
CLN3-230ENST00000568076 SCGB1A1P11684 91 aa13.57□□□□□ -0.24
CLN3-230ENST00000568076 GVQW2A0A096LPI5 108 aaPredicted RBP13.55□□□□□ -0.24
CLN3-230ENST00000568076 C6orf48Q9UBA6 75 aa13.55□□□□□ -0.24
CLN3-230ENST00000568076 NBEAL1Q6ZS30 2694 aa13.55□□□□□ -0.24
CLN3-230ENST00000568076 K7EIL1 84 aa13.54□□□□□ -0.24
CLN3-230ENST00000568076 NCR3O14931 201 aa13.54□□□□□ -0.24
CLN3-230ENST00000568076 LINC01556Q5JQF7 62 aa13.54□□□□□ -0.24
CLN3-230ENST00000568076 MUC7Q8TAX7 377 aa13.54□□□□□ -0.24
CLN3-230ENST00000568076 TM2D3Q9BRN9 247 aa13.54□□□□□ -0.24
CLN3-230ENST00000568076 LECT2O14960 151 aa13.53□□□□□ -0.24
CLN3-230ENST00000568076 HIGD2BQ4VC39 106 aa13.53□□□□□ -0.24
CLN3-230ENST00000568076 TMEM126AQ9H061 195 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms