RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 UNC79Q9P2D8 2635 aa8.21□□□□□ -1.1
CDH1-210ENST00000566612 SMCPP49901 116 aaPredicted RBP8.21□□□□□ -1.1
CDH1-210ENST00000566612 CELSR1Q9NYQ6 3014 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 CUBNO60494 3623 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 PSCAO43653 123 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 CLUHP3Q96NS8 147 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 CSDC2Q9Y534 153 aaKnown RBP8.2□□□□□ -1.1
CDH1-210ENST00000566612 FAM236AA0A1B0GUQ0 79 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 FAM236BA0A1B0GV22 79 aa8.2□□□□□ -1.1
CDH1-210ENST00000566612 ACYP1P07311 99 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 SMIM11BQ8TCY0 68 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 RNF183Q96D59 192 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 UBL5Q9BZL1 73 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 MIFP14174 115 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 CXCL5P42830 114 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 PRR3P79522 188 aaKnown RBP8.19□□□□□ -1.1
CDH1-210ENST00000566612 C9orf116Q5BN46 136 aaPredicted RBP8.19□□□□□ -1.1
CDH1-210ENST00000566612 UBR5O95071 2799 aaPredicted RBP8.19□□□□□ -1.1
CDH1-210ENST00000566612 IGHV4-30-4P0DP06 118 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 C9orf153Q5TBE3 101 aa8.19□□□□□ -1.1
CDH1-210ENST00000566612 DEFB105AQ8NG35 78 aa8.18□□□□□ -1.1
CDH1-210ENST00000566612 PRO0461Q9UI25 63 aa8.18□□□□□ -1.1
CDH1-210ENST00000566612 SETXQ7Z333 2677 aaKnown RBP8.18□□□□□ -1.1
CDH1-210ENST00000566612 CD164L2Q6UWJ8 174 aa8.18□□□□□ -1.1
CDH1-210ENST00000566612 DSCR8Q96T75 97 aa8.18□□□□□ -1.1
CDH1-210ENST00000566612 ITPR2Q14571 2701 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 TRACP01848 142 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 A0A087WZ39 114 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 KIR2DL5BQ8NHK3 375 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 SS18L2Q9UHA2 77 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 NF1P21359 2839 aa8.17□□□□□ -1.1
CDH1-210ENST00000566612 PRB2P02812 416 aaPredicted RBP8.16□□□□□ -1.1
CDH1-210ENST00000566612 C6orf99Q4VX62 202 aa8.16□□□□□ -1.1
CDH1-210ENST00000566612 RETNQ9HD89 108 aa8.16□□□□□ -1.1
CDH1-210ENST00000566612 IGLV5-39A0A0G2JS06 123 aa8.15□□□□□ -1.11
CDH1-210ENST00000566612 UNQ6190/PRO20217Q6UXQ8 127 aa8.14□□□□□ -1.11
CDH1-210ENST00000566612 C11orf45Q8TAV5 145 aa8.14□□□□□ -1.11
CDH1-210ENST00000566612 NDUFV3P56181 108 aaKnown RBP8.14□□□□□ -1.11
CDH1-210ENST00000566612 DEFB131BA0A096LNP1 70 aa8.14□□□□□ -1.11
CDH1-210ENST00000566612 EIF4EBP3O60516 100 aaPredicted RBP8.14□□□□□ -1.11
CDH1-210ENST00000566612 KPRPQ5T749 579 aaPredicted RBP8.14□□□□□ -1.11
CDH1-210ENST00000566612 CELSR2Q9HCU4 2923 aa8.13□□□□□ -1.11
CDH1-210ENST00000566612 SOSTDC1Q6X4U4 206 aa8.13□□□□□ -1.11
CDH1-210ENST00000566612 LINC00643Q86TS7 51 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 IGHV3OR16-9A0A0B4J2B5 98 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 LELP1Q5T871 98 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 SDIM1Q6ZPB5 146 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 Q8IZM0 81 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 LINC00337Q8N6G1 96 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 CDIP1Q9H305 208 aa8.12□□□□□ -1.11
CDH1-210ENST00000566612 FBN2P35556 2912 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 CYSRT1A8MQ03 144 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 A8MTW9 85 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 TMEM256-PLSCR3K7ERE1 68 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 KRTAP1-3Q8IUG1 177 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 DIRC1Q969H9 104 aa8.11□□□□□ -1.11
CDH1-210ENST00000566612 IGLV5-45A0A087WSX0 123 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 A0A087WYN8 130 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 JMJD7-PLA2G4BH0Y9G9 81 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 C6orf223Q8N319 242 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 LITAFQ99732 161 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 RBM3P98179 157 aaKnown RBP8.1□□□□□ -1.11
CDH1-210ENST00000566612 Q8N3U1 123 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 CELA1Q9UNI1 258 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 hADV29S1A0JD25 119 aa8.1□□□□□ -1.11
CDH1-210ENST00000566612 A0A1B0GX51 115 aa8.09□□□□□ -1.11
CDH1-210ENST00000566612 GIG44P09565 113 aaPredicted RBP8.09□□□□□ -1.11
CDH1-210ENST00000566612 NANOS2P60321 138 aaKnown RBP8.09□□□□□ -1.11
CDH1-210ENST00000566612 NOTCH1P46531 2555 aa8.09□□□□□ -1.11
CDH1-210ENST00000566612 RPL28P46779 137 aaKnown RBP8.09□□□□□ -1.12
CDH1-210ENST00000566612 X6R8D5 127 aa8.08□□□□□ -1.12
CDH1-210ENST00000566612 A0A1B0GUV1 79 aa8.07□□□□□ -1.12
CDH1-210ENST00000566612 Q6ZTC4 211 aa8.07□□□□□ -1.12
CDH1-210ENST00000566612 APCP25054 2843 aa8.07□□□□□ -1.12
CDH1-210ENST00000566612 COX7BP24311 80 aa8.07□□□□□ -1.12
CDH1-210ENST00000566612 RMI2Q96E14 147 aa8.07□□□□□ -1.12
CDH1-210ENST00000566612 A0A0J9YWU9 116 aa8.06□□□□□ -1.12
CDH1-210ENST00000566612 ETDCA0A1B0GVM5 59 aa8.06□□□□□ -1.12
CDH1-210ENST00000566612 Q6ZQY7 126 aa8.06□□□□□ -1.12
CDH1-210ENST00000566612 UBE2BP63146 152 aa8.06□□□□□ -1.12
CDH1-210ENST00000566612 F8WEM9 126 aa8.05□□□□□ -1.12
CDH1-210ENST00000566612 SBSPONQ8IVN8 264 aa8.05□□□□□ -1.12
CDH1-210ENST00000566612 CSNK1G2-AS1Q8NCQ2 148 aa8.05□□□□□ -1.12
CDH1-210ENST00000566612 CR1P17927 2039 aa8.05□□□□□ -1.12
CDH1-210ENST00000566612 C19orf73Q9NVV2 129 aa8.04□□□□□ -1.12
CDH1-210ENST00000566612 MXRA5Q9NR99 2828 aa8.04□□□□□ -1.12
CDH1-210ENST00000566612 FAM218AQ96MZ4 157 aa8.04□□□□□ -1.12
CDH1-210ENST00000566612 WFDC10BQ8IUB3 73 aa8.04□□□□□ -1.12
CDH1-210ENST00000566612 IGKV2-28A0A075B6P5 120 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 TRAV23DV6A0A075B6W5 121 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 IGKV2D-28P01615 120 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 SHISA2Q6UWI4 295 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 SMIM20Q8N5G0 67 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 IGKV2-24A0A0C4DH68 120 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 PLAC8L1A1L4L8 177 aa8.03□□□□□ -1.12
CDH1-210ENST00000566612 COL6A5A8TX70 2615 aa8.02□□□□□ -1.12
CDH1-210ENST00000566612 CCDC179H3BU77 68 aa8.02□□□□□ -1.12
CDH1-210ENST00000566612 SYCNQ0VAF6 134 aa8.02□□□□□ -1.12
CDH1-210ENST00000566612 COX17Q14061 63 aa8.02□□□□□ -1.12
CDH1-210ENST00000566612 KRTAP10-3P60369 221 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 405.7 ms