RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 IGLC3P0DOY3 106 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 ZNF22P17026 224 aaPredicted RBP5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BOP23527 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BBP33778 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BDP58876 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BCP62807 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST2H2BEQ16778 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.79□□□□□ -1.48
VPS35-206ENST00000565228 KRTAP11-1Q8IUC1 163 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 LINC01561Q8N1V8 128 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BHQ93079 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 CHCHD1Q96BP2 118 aaKnown RBP5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BNQ99877 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BMQ99879 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.78□□□□□ -1.48
VPS35-206ENST00000565228 FAM168BA1KXE4 195 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 ATP6V1G1O75348 118 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 SPINK8P0C7L1 97 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 PTTG1IPP53801 180 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 Q6ZRP5 223 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 MRPL35Q9NZE8 188 aaKnown RBP5.78□□□□□ -1.48
VPS35-206ENST00000565228 PLAC8Q9NZF1 115 aa5.78□□□□□ -1.48
VPS35-206ENST00000565228 APOMO95445 188 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 G0S2P27469 103 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 HERVK_113P63121 156 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 GAGE2BQ13066 116 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 MAJINQ3KP22 176 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 BAGE3Q86Y29 109 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 LINC00469Q8N7U9 141 aa5.77□□□□□ -1.49
VPS35-206ENST00000565228 IGLV5-39A0A0G2JS06 123 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 NDUFA6P56556 154 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 RAB5BP61020 215 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 RNF151Q2KHN1 245 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 C9orf129Q5T035 196 aaKnown RBP5.76□□□□□ -1.49
VPS35-206ENST00000565228 Q8IZM0 81 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 STPG4Q8N801 248 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 IFI27L1Q96BM0 104 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 GEMIN7Q9H840 131 aaKnown RBP5.76□□□□□ -1.49
VPS35-206ENST00000565228 TOMM7Q9P0U1 55 aa5.76□□□□□ -1.49
VPS35-206ENST00000565228 LOC107984640A0A0U1RRK4 108 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 LINC01549A6NIU2 74 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 NDUFA1O15239 70 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 TLX1NBP0CAT3 122 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 PAPPA-AS1Q5QFB9 102 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 TNXBP22105 4242 aa5.75□□□□□ -1.49
VPS35-206ENST00000565228 HSBP1O75506 76 aa5.74□□□□□ -1.49
VPS35-206ENST00000565228 ATP5LO75964 103 aa5.74□□□□□ -1.49
VPS35-206ENST00000565228 INAFM2P0DMQ5 153 aa5.74□□□□□ -1.49
VPS35-206ENST00000565228 RPL18AQ02543 176 aaKnown RBP5.74□□□□□ -1.49
VPS35-206ENST00000565228 ODF1Q14990 250 aa5.74□□□□□ -1.49
VPS35-206ENST00000565228 CHTOPQ9Y3Y2 248 aaKnown RBP5.74□□□□□ -1.49
VPS35-206ENST00000565228 TRAV12-1A0A0B4J245 112 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 FABP4P15090 132 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 GAGE2EQ4V326 116 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 PHF5AQ7RTV0 110 aaKnown RBP5.73□□□□□ -1.49
VPS35-206ENST00000565228 COX7B2Q8TF08 81 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 PMCHL2Q9BQD1 86 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 GAGE2DQ9UEU5 116 aa5.73□□□□□ -1.49
VPS35-206ENST00000565228 RNF213Q63HN8 5207 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 TRBV30A0A0K0K1B3 111 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 TMEM223A0PJW6 202 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 F8WDY8 70 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 FAM229AH3BQW9 127 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 SEC11AP67812 179 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 C6orf226Q5I0X4 101 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 SERTAD4-AS1Q5TG53 156 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 Q8NDZ9 215 aa5.72□□□□□ -1.49
VPS35-206ENST00000565228 F8VRH5 84 aa5.71□□□□□ -1.5
VPS35-206ENST00000565228 H0Y8G0 127 aa5.71□□□□□ -1.5
VPS35-206ENST00000565228 LEPROTL1O95214 131 aa5.71□□□□□ -1.5
VPS35-206ENST00000565228 TSPEAR-AS2P59090 65 aa5.71□□□□□ -1.5
VPS35-206ENST00000565228 RPL37AP61513 92 aaKnown RBP5.71□□□□□ -1.5
VPS35-206ENST00000565228 COA6Q5JTJ3 125 aaKnown RBP5.71□□□□□ -1.5
VPS35-206ENST00000565228 DPH3Q96FX2 82 aa5.71□□□□□ -1.5
VPS35-206ENST00000565228 PACRGQ96M98 296 aaPredicted RBP5.71□□□□□ -1.5
VPS35-206ENST00000565228 NDUFC2-KCTD14E9PQ53 114 aa5.7□□□□□ -1.5
VPS35-206ENST00000565228 TMEM170BQ5T4T1 132 aa5.7□□□□□ -1.5
VPS35-206ENST00000565228 ZNF625Q96I27 306 aaPredicted RBP5.7□□□□□ -1.5
VPS35-206ENST00000565228 XAGE1AQ9HD64 81 aa5.7□□□□□ -1.5
VPS35-206ENST00000565228 PLA2G1BP04054 148 aaKnown RBP5.69□□□□□ -1.5
VPS35-206ENST00000565228 PRSS2P07478 247 aa5.69□□□□□ -1.5
VPS35-206ENST00000565228 S100A1P23297 94 aa5.69□□□□□ -1.5
VPS35-206ENST00000565228 CKS1BP61024 79 aa5.69□□□□□ -1.5
VPS35-206ENST00000565228 PRR3P79522 188 aaKnown RBP5.69□□□□□ -1.5
VPS35-206ENST00000565228 FAM19A5Q7Z5A7 132 aaPredicted RBP5.69□□□□□ -1.5
VPS35-206ENST00000565228 H3BRM9 83 aa5.67□□□□□ -1.5
VPS35-206ENST00000565228 LINC00474Q9P2X8 69 aa5.67□□□□□ -1.5
VPS35-206ENST00000565228 PSORS1C2Q9UIG4 136 aa5.67□□□□□ -1.5
VPS35-206ENST00000565228 SYS1-DBNDD2H3BUS1 97 aa5.66□□□□□ -1.5
VPS35-206ENST00000565228 C3orf79P0CE67 100 aa5.66□□□□□ -1.5
VPS35-206ENST00000565228 CXCL5P42830 114 aa5.66□□□□□ -1.5
VPS35-206ENST00000565228 SRSF9Q13242 221 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS35-206ENST00000565228 PFN2P35080 140 aa5.65□□□□□ -1.5
VPS35-206ENST00000565228 HSPB8Q9UJY1 196 aa5.65□□□□□ -1.5
VPS35-206ENST00000565228 C22orf24Q9Y442 160 aa5.65□□□□□ -1.5
VPS35-206ENST00000565228 M0QXV9 152 aa5.64□□□□□ -1.51
VPS35-206ENST00000565228 MT1HL1P0DM35 61 aa5.64□□□□□ -1.51
VPS35-206ENST00000565228 LINC01545Q5VT33 79 aa5.64□□□□□ -1.51
VPS35-206ENST00000565228 ERG28Q9UKR5 140 aa5.64□□□□□ -1.51
VPS35-206ENST00000565228 IGKV2D-26A0A0A0MRZ7 120 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms